BAC Information

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BAC

Clone NameMSMg01-406H12
Chromosome8 (Build37)
Map Location 44,159,515 - 44,159,747
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp353, EG620772, LOC628212
Downstream geneTriml1, LOC622082, EG622117, LOC100039417, Zfp42, Adam26b, Adam26a, EG384813, Adam34, EG384814, LOC100039472, LOC547011, LOC622263
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406H12.T7 (MSMg01no406_h12.b1)MSMg01-406H12.TJ (MSMg01no406_h12.g1)
ACCAG504657AG504658
length754761
length of high quality
(start - end)
233 (322 - 554)393 (72 - 464)
definitionCHROMAT_FILE: MSMg01no406_h12.b1 PHD_FILE: MSMg01no406_h12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:47 2005CHROMAT_FILE: MSMg01no406_h12.g1 PHD_FILE: MSMg01no406_h12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTAAAATTGCGAGCGCTAAACGAATCACAAATGCTAACAATCCGCGGAA
NTCTCTCCATTCCTTGAATTGATTTCTTTGCTTTATCTGTCGTCCAGCTG
AGAACAAAGTAAACTGCATAACTTCTGTTCAGTTCTATTTTCTTTTGTTT
TGCTTTCCTTTGTTTGAGGTAAGGTTTTGCTATACAGCTTAGGCTGACCT
TGAACTCATGGCAATCCTCCTCCTTCGACCTTCCAAATGCTGAGTTTACC
GCCATTCTAGGCTGAATCAAGAAAAATGTAATACCACTATTTACCTCAAG
TAGAATCGAATATCCATGCNCTAATGAAGCTGGAATGAATGTGAAGGTAA
AAGATGCAATGCTTCATATTAGACTAGTGATTACCATGAGTACATGCATG
TAAACGGCCAGCCCCTCTCGGAGTCAAAATTCAGCCCTGGTTATGATCTC
ACCCATATCTTGATTATCTTCTCCTCCTCTCTCTTTCTTTTACTTTTCTC
CCTTTCCTCCTTCCCCTTTCTTCAATTCCTATGATTGAAGTATATTATAT
ATACATATCAATACATCACAATAAGCTCCATTACTTTGTATAAATAATGG
GTGCCATCTAAAACATTCGCTTTGTGCTAGAGACACTGCTCATTTATTTT
TTAATATTACCACTCCCACAAAGGACCTGAGTTCAGTTCTCCTCCCCACC
TGCTTTCTTTATGATAAGAAACATTTCAGCGGTCCCTTTTATTGTTTTTT
TACG
AATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACTGCACTGGTTTCCATGGTGGCTATAGT
AGCTTGCAATCCCACCAACAGCGAATGATGGCCCCCTTTTCTGGCATCCC
TGCATTTCAGACAACATTTGTTGTCAGTTGCTCTTTGGGTCTTAGCCCTT
CAGACACCAGTAAGACGAAATTTGCATTCCCTTGATTTTTAAGTTGACCA
CTTGTAAAGGTGTTTCTTACCTATTTCTTCTTCTTCTTTTGAGAGCTCTG
TTCTGCTCTATAGCTTTTTTCTCCCCTTTTTAAACAGGTCGATTGATTTC
CAGACAAGTAATAGGTGTAGGAAGAGAATTTCTGAATAGGACATCCATTT
GTTCAGGAATTAAAGCCAATGATTGATAAGCAGAGCCTCATGAAACTAAA
AGTTCCTGATAAGCAAAGGACACAATGAATGGACTGTAGAGGAAATCCAC
GGAGTGGCAGAGATTCTTTGCTAGCTAACTAAAGGAAAGCATACTAGGAA
CTCTAAAACCAAAGGGAAACAACACATTTTGAGAAAAGATTCCACTATGT
AAAGGGCTGTTTCTATGTCCGGACATCTATTTATTTAATAATATTATTGT
TAAGGTAGAGACCCCCACTTTTCCCAGAAGGCTTAATCAAGTTTTCTCAA
GCCTTTTACCTCACCCGCTCTCCTGTTGAGGATCACAATCCCTGCCATTA
AACGTCTACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_h12.b1 MSMg01no406_h12.b1 CHROMAT_FILE:
MSMg01no406_h12.b1 PHD_FILE: MSMg01no406_h12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:47 2005
         (233 letters)



>mm_chr8_44159315_44159947
          Length = 633

 Score =  451 bits (233), Expect = e-131
 Identities = 233/233 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   taatgaagctggaatgaatgtgaaggtaaaagatgcaatgcttcatattagactagtgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taatgaagctggaatgaatgtgaaggtaaaagatgcaatgcttcatattagactagtgat 260

                                                                       
Query: 61  taccatgagtacatgcatgtaaacggccagcccctctcggagtcaaaattcagccctggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taccatgagtacatgcatgtaaacggccagcccctctcggagtcaaaattcagccctggt 320

                                                                       
Query: 121 tatgatctcacccatatcttgattatcttctcctcctctctctttcttttacttttctcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatgatctcacccatatcttgattatcttctcctcctctctctttcttttacttttctcc 380

                                                                
Query: 181 ctttcctccttcccctttcttcaattcctatgattgaagtatattatatatac 233
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctttcctccttcccctttcttcaattcctatgattgaagtatattatatatac 433


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space:   139776
Effective search space used:   139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)