Query= MSMg01no406_j02.b1 MSMg01no406_j02.b1 CHROMAT_FILE:
MSMg01no406_j02.b1 PHD_FILE: MSMg01no406_j02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:55 2005
(257 letters)
>mm_chr8_100193930_100194590
Length = 661
Score = 470 bits (243), Expect = e-137
Identities = 255/261 (97%), Gaps = 4/261 (1%)
Strand = Plus / Plus
Query: 1 gtgtctggggacagacatctttccttgagtcatgttttcctgttcaggtaactgacaggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtgtctggggacagacatctttccttgagtcatgttttcctgttcaggtaactgacaggc 260
Query: 61 caagtgaataagggcggaaaaacgataagtttttattctttctcagaatgcctttgggta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caagtgaataagggcggaaaaacgataagtttttattctttctcagaatgcctttgggta 320
Query: 121 gatagtaactatatgaattctaggtacatcggaatatcttatcttccatcacaagctttt 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatagtaactatatgaattctaggtacatcggaatatcttatcttccatcacaagctttc 380
Query: 181 aggtatacaggcatttttttt----ggtcattaatcatattctagttgttttacttacta 236
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 aggtatacaggcattttttttttttggtcattaatcatattctagttgttttacttacta 440
Query: 237 attagatgctgttgattatgg 257
|||| ||||||||||||||||
Sbjct: 441 attaaatgctgttgattatgg 461
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 257
Length of database: 661
Length adjustment: 9
Effective length of query: 248
Effective length of database: 652
Effective search space: 161696
Effective search space used: 161696
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no406_j02.g1 MSMg01no406_j02.g1 CHROMAT_FILE:
MSMg01no406_j02.g1 PHD_FILE: MSMg01no406_j02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:55 2005
(469 letters)
>mm_chr8_100363434_100364302
Length = 869
Score = 690 bits (357), Expect = 0.0
Identities = 369/373 (98%)
Strand = Plus / Minus
Query: 1 acagtatgtttataaaagtttcatacagtatcctattgagttatatgcaaaatatgtcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 acagtatgtttataaaagtttcatacagtatcctattgagttatatgcaaaatatgtcaa 314
Query: 61 ttattattcttgactaattttttcaatccttgagctaatctcaggatgaataggaacctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ttattattcttgactaattttttcaatccttgagctaatctcaggatgaataggaacctg 254
Query: 121 tggagactagcatattgtaagaaaacccgtaaggaacttggaaagcaaagtcctatagat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tggagactagcatattgtaagaaaacccgtaaggaacttggaaagcaaagtcctatagat 194
Query: 181 ggattttattccagaaacatggttgctttggtaaggaatcacatccaaagaccttctata 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ggcttttattccagaaacatggttgctttggtaaggaatcacatccaaagaccttctata 134
Query: 241 tctgtgtgatttgtttggaatacagacacacctttaaacccagcactcaggagacagagg 300
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 tctgtgtgatctggctggaatacagacacacctttaaacccagcactcaggagacagagg 74
Query: 301 catgcagttctctgagttctagttagtcaattctgctcagtcagtttaattcagtgcatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 catgcagttctctgagttctagttagtcaattctgctcagtcagtttaattcagtgcatt 14
Query: 361 agagcttgtctgt 373
|||||||||||||
Sbjct: 13 agagcttgtctgt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space: 394281
Effective search space used: 394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
