Query= MSMg01no406_n01.b1 MSMg01no406_n01.b1 CHROMAT_FILE:
MSMg01no406_n01.b1 PHD_FILE: MSMg01no406_n01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:15 2005
(477 letters)
>mm_chr8_126725082_126725957
Length = 876
Score = 762 bits (394), Expect = 0.0
Identities = 454/474 (95%), Gaps = 1/474 (0%)
Strand = Plus / Plus
Query: 4 ggaattccaggctttgactcaggacagatagaggtgacactcttctttccttagggcatc 63
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccaggctctgactcaggacagatagaggtgacactcttctttccttagggcatc 263
Query: 64 tgcaggtggtcttggcctcagtttctgttccaccctaaatcaagttcagctcttcaagag 123
||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 264 tgcaggtggccttggcctcagtttctgtaccaccctaaaccaagttcagctcttcaagag 323
Query: 124 aaagccaagtgttctggtggtggggaggaagctagtttctctagacccagctaggaccct 183
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 324 aaagccaagtgttctggtggtggggaggaagctagtttctctagacccagct-ggaccct 382
Query: 184 ttcttcctgatcatcctggtctgctttgtatccatcccatgtaggcgtgagctgcagacg 243
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 383 ttcttcctgatcatcctggtctgctttgtatccatcccatgtaggcatgagctgcagacg 442
Query: 244 tgaattaaatccgttgtttataattgagtttattttttatcgcgtaccctcttcagaagc 303
|| ||||||||||||||||||||||||||| | || ||||||||||||||||||||||
Sbjct: 443 tggattaaatccgttgtttataattgagttcacttcccatcgcgtaccctcttcagaagc 502
Query: 304 cagcatggcctatgaaagtctccctctctgctgaggtcagcgatggggtaggtccctacg 363
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 503 cagcatggcctatgaaagtctccctctctgctgaggtcagcgatggggtaagtccctatg 562
Query: 364 agctggacagtggtctagcctccctctctggctcaggaaggagagtctttcccagcaggg 423
|||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||
Sbjct: 563 agctggacagtggtctagcctccctccctggctcgggaaggagagtttttcccagcaggg 622
Query: 424 gtctgatgacagggtaggggtgtttcataactgaaaacccttcttaaatactgt 477
| ||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct: 623 gcctgatgacagggtagggatgtttcataactgaaaacccttcttaaacactgt 676
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 876
Length adjustment: 10
Effective length of query: 467
Effective length of database: 866
Effective search space: 404422
Effective search space used: 404422
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no406_n01.g1 MSMg01no406_n01.g1 CHROMAT_FILE:
MSMg01no406_n01.g1 PHD_FILE: MSMg01no406_n01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:15 2005
(484 letters)
>mm_chr8_126931723_126932606
Length = 884
Score = 671 bits (347), Expect = 0.0
Identities = 371/379 (97%)
Strand = Plus / Minus
Query: 106 ttttgagacagggggtctcacgtaacacagggtggtctcacatacagcagagggtgacct 165
||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||
Sbjct: 884 ttttgagacagggggtctcacaaaacacagggtggcctcacatatagcagagggtgacct 825
Query: 166 tgaacttctgacctgcctccttttgctcccaagtgccaggattactattgtacccagttg 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 tgaacttctgacctgcctccttttgctcccaagtgccaggattactattgtacccagttg 765
Query: 226 ctatagtgctaggattgatctaagggctttgtatgtgctacacggtgctctcagcaaccg 285
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 764 ctatagtgctaggattgatctaagggctttgtacgtgctacacggtgctctcagcaactg 705
Query: 286 tgctatatagctccagtccccagcatatatgtttaatataaggaaaattccagtcacttc 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 tgctatatagctccagtccccagcatatatgtttaatataaggaaaattccagtcacttc 645
Query: 346 acagagccaccaaaggtgtgggtccatcacatgcctcctcaggtgaaggaatttgctcaa 405
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 644 acagagccaccaaaggtgtgggtccatcacatgcctcctcaggtgaaggaatttgcccaa 585
Query: 406 catggggctcacctcagcttctttagcttcctcttggcctttccagggaactggcgcaaa 465
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 584 catggggctcacctcagcttttttagcttcctcttggcctttccagggaactggcgcaaa 525
Query: 466 tggatagagctggctgaca 484
|||||||||||||||||||
Sbjct: 524 tggatagagctggctgaca 506
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space: 414276
Effective search space used: 414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
