BAC Information

Click to search

BAC

Clone NameMSMg01-407I01
Chromosome8 (Build37)
Map Location 64,102,894 - 64,237,487
singlet/doubletdoublet
Overlap genePalld, LOC100040872
Upstream geneMfap3l, LOC100040679, 2700029M09Rik, Clcn3, B230317F23Rik, Nek1, Sh3rf1, EG664975, Cbr4
Downstream geneBC013672, Anxa10, LOC100040775, LOC384830, LOC100040804, LOC665267
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-407I01.T7 (MSMg01no407_i01.b1)MSMg01-407I01.TJ (MSMg01no407_i01.g1)
ACCAG505446AG505447
length756754
length of high quality
(start - end)		646 (44 - 689)516 (75 - 590)
definitionCHROMAT_FILE: MSMg01no407_i01.b1 PHD_FILE: MSMg01no407_i01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:23:09 2005CHROMAT_FILE: MSMg01no407_i01.g1 PHD_FILE: MSMg01no407_i01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:23:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,236,847 - 64,237,487)(64,102,894 - 64,103,409)
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCNGGA
ATTCCTAACCATAGCATGAAAACAGACTTTCAGTAACCCTTTTTAACACT
TCTAAGTAGACTCAGCAAAATGCGTGTTTATTTCTGTTGCTGATAAATCC
ATGGGAAATCTCTTCTGACCCCAGCAATTAAATAAATAAATTTTAAAAGT
CCTAGTTTATAACTGCTGGAATAATGGCTGAAAGATTATTTTCAGTAACC
CAGAATCTTGCCTTTCTCCCTGCCATTGTTTTAGAAATTACAGAAAGATA
TGACCAGCATGCATTTGGGCTGCCCCCACCCCCCAACCAGCTGAAATGAG
CAGTTATCCTTAGGTTATCTGATGAAAAGATTGCTGCTGCACGCACTACC
AGGATGTAAAATACTATGTCTCAGAGAAGATTATAGCTGGTAGACACACA
CGTCTATAGTTGCTATGCTTCTTTGTCCTGGTCCCTTAAGGAACAAGACC
TACCTTCAACATGACAGTGTTTGTTTGCAGTTTGTCTGTTTGTTTCTTGA
TTTTTCTGGGTCCTTTGCCCCTCCCACTACAAATCTACCTTGACTAGAGT
TGGCAGTGATGATTCTGTAGGGCTAANATTAGAAAGTTCTCGGGGGGCCA
TTTAAACATATCCTTCTTGTCTCCTAGAAGTTCTGCAGAGCCTCCTTNGA
NATGCTCACTTTAGCAACAGCTGTAAAACAGTAAAACGATAGCTAGGTAC
ACTAAN

ATTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCACCCAGCACAGGGAGAGAAGAGAGA
CCACAAGGCAGGAGTCTGCTGCAGGAGGAGGAAAGATGACGTTTGCACGG
GACTGTGGATTCTCCGGGCTCTCCATAGTCAATGGTTACTGAACACATTA
CACATCTAATCCTTCCAAGGGCTCCATGATGTCATCGCTTTGCTATTTGC
TTTCTACAGATGAGGAGACTGGTGCTCACAGGACAGTTAGGTCATCTCCA
GGCTAAGTTTCACACACCATGGCAGGGGGAGCCAAGGTTGAAACCTAGGC
AGTCTCCTGTGGGGTGTAAGGAACACAAAGGCAAAGCTAAAACCCCAACC
AGGAGTTAAAATACTGGCTTCCAGATTTTATACATCTGTTTTTTATTTAT
GATATATGCACATATAAGACATGCAGGTATACTTACTTATAAATCATATA
CATATATAATGTAAAGATATGCCCTCAATATAAGCTTTAGGTTTGGAATC
CAAACACACTTTAGGGCTGTACAAAGACAGATTCTTGAGGTAGAATTCTG
CGATTGTGTTCTACTTTAGAATTTGCTGGGGCTTGAGAGAGATGGCTTAT
CAGTTAAGAGCACTGACTGCTCTTTCCAAAGACCCGGATTTTTATTCCCG
CAAACCCACAACAGTTTAAAAAGTTCGGGAATTTCCGTTCTGGGGATTCC
GACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no407_i01.b1 MSMg01no407_i01.b1 CHROMAT_FILE:
MSMg01no407_i01.b1 PHD_FILE: MSMg01no407_i01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:09 2005
         (646 letters)



>mm_chr8_64236492_64237537
          Length = 1046

 Score = 1218 bits (630), Expect = 0.0
 Identities = 638/641 (99%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcctaaccatagcatgaaaacagactttcagtaaccctttttaacacttctaagta 65
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 996 gaattcctaaccacaggatgaaaacagactttcagtaaccctttttaacacttctaagta 937

                                                                       
Query: 66  gactcagcaaaatgcgtgtttatttctgttgctgataaatccatgggaaatctcttctga 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 936 gactcagcaaaatgcgtgtttatttctgttgctgataaatccatgggaaatctcttctga 877

                                                                       
Query: 126 ccccagcaattaaataaataaattttaaaagtcctagtttataactgctggaataatggc 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 ccccagcaattaaataaataaattttaaaagtcctagtttataactgctggaataatggc 817

                                                                       
Query: 186 tgaaagattattttcagtaacccagaatcttgcctttctccctgccattgttttagaaat 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 tgaaagattattttcagtaacccagaatcttgcctttctccctgccattgttttagaaat 757

                                                                       
Query: 246 tacagaaagatatgaccagcatgcatttgggctgcccccaccccccaaccagctgaaatg 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 tacagaaagatatgaccagcatgcatttgggctgcccccaccccccaaccagctgaaatg 697

                                                                       
Query: 306 agcagttatccttaggttatctgatgaaaagattgctgctgcacgcactaccaggatgta 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 agcagttatccttaggttatctgatgaaaagattgctgctgcacgcactaccaggatgta 637

                                                                       
Query: 366 aaatactatgtctcagagaagattatagctggtagacacacacgtctatagttgctatgc 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 aaatactatgtctcagagaagattatagctggtagacacacacgtctatagttgctatgc 577

                                                                       
Query: 426 ttctttgtcctggtcccttaaggaacaagacctaccttcaacatgacagtgtttgtttgc 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 ttctttgtcctggtcccttaaggaacaagacctaccttcaacatgacagtgtttgtttgc 517

                                                                       
Query: 486 agtttgtctgtttgtttcttgatttttctgggtcctttgcccctcccactacaaatctac 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 agtttgtctgtttgtttcttgatttttctgggtcctttgcccctcccactacaaatctac 457

                                                                       
Query: 546 cttgactagagttggcagtgatgattctgtagggctaanattagaaagttctcggggggc 605
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 456 cttgactagagttggcagtgatgattctgtagggctaaaattagaaagttctcggggggc 397

                                                    
Query: 606 catttaaacatatccttcttgtctcctagaagttctgcaga 646
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 catttaaacatatccttcttgtctcctagaagttctgcaga 356


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space:   658896
Effective search space used:   658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no407_i01.g1 MSMg01no407_i01.g1 CHROMAT_FILE:
MSMg01no407_i01.g1 PHD_FILE: MSMg01no407_i01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:10 2005
         (516 letters)



>mm_chr8_64102694_64103609
          Length = 916

 Score =  982 bits (508), Expect = 0.0
 Identities = 514/516 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacccagcacagggagagaagagagaccacaaggcaggagtctgctgcaggaggaggaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacccagcacagggagagaagagagaccacaaggcaggagtctgctgcaggaggaggaaa 260

                                                                       
Query: 61  gatgacgtttgcacgggactgtggattctccgggctctccatagtcaatggttactgaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatgacgtttgcacgggactgtggattctccgggctctccatagtcaatggttactgaac 320

                                                                       
Query: 121 acattacacatctaatccttccaagggctccatgatgtcatcgctttgctatttgctttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acattacacatctaatccttccaagggctccatgatgtcatcgctttgctatttgctttc 380

                                                                       
Query: 181 tacagatgaggagactggtgctcacaggacagttaggtcatctccaggctaagtttcaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tacagatgaggagactggtgctcacaggacagttaggtcatctccaggctaagtttcaca 440

                                                                       
Query: 241 caccatggcagggggagccaaggttgaaacctaggcagtctcctgtggggtgtaaggaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caccatggcagggggagccaaggttgaaacctaggcagtctcctgtggggtgtaaggaac 500

                                                                       
Query: 301 acaaaggcaaagctaaaaccccaaccaggagttaaaatactggcttccagattttataca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acaaaggcaaagctaaaaccccaaccaggagttaaaatactggcttccagattttataca 560

                                                                       
Query: 361 tctgttttttatttatgatatatgcacatataagacatgcaggtatacttacttataaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctgttttttatttatgatatatgcacatataagacatgcaggtatacttacttataaat 620

                                                                       
Query: 421 catatacatatataatgtaaagatatgccctcaatataagctttaggtttggaatccaaa 480
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 catatacgtatataatgtaaagatatgccctcaatataagctttaggtttggaatccaaa 680

                                               
Query: 481 cacactttagggctgtacaaagacagattcttgagg 516
           ||||||||||||||||||| ||||||||||||||||
Sbjct: 681 cacactttagggctgtacagagacagattcttgagg 716


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space:   458436
Effective search space used:   458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |