BAC Information

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BAC

Clone NameMSMg01-408A18
Chromosome8 (Build37)
Map Location 106,650,424 - 106,650,890
singlet/doubletsinglet
Overlap geneCdh5
Upstream gene1600027J07Rik, LOC100041397, LOC667656
Downstream geneBean, Tk2, Cklf, Cmtm2a, Cmtm2b, Cmtm3, Cmtm4, Dync1li2, Ccdc79, Appbp1, Car7, LOC628007, 4833426J09Rik, Cdh16, Rrad, 1110019N10Rik, EG637550, LOC382052, LOC100041473, Ces6, LOC628050, 4932416K20Rik, BC015286, Matr3-ps2, Ces2, LOC667754, LOC667760, Ces5, 2310038E17Rik, 2210023G05Rik, LOC436058, EG436059, Es31, EG13909, LOC667774
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-408A18.T7 (MSMg01no408_a18.b1)MSMg01-408A18.TJ (MSMg01no408_a18.g1)
ACCAG505857AG505858
length768781
length of high quality
(start - end)
473 (40 - 512)67 (75 - 141)
definitionCHROMAT_FILE: MSMg01no408_a18.b1 PHD_FILE: MSMg01no408_a18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:23:53 2005CHROMAT_FILE: MSMg01no408_a18.g1 PHD_FILE: MSMg01no408_a18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:23:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CTGTCTCCACAGGGACTTCTGTCATCCGTGTGACAGCAGTGGATGCAGAT
GACCCCACTGTGGCCGGCCATGCCACTGTCTTGTACCAAATCGTGAAAGG
AAATGAGTATTTCAGCATTGATAATTCTGGTCTGTATGACTAAACCTTTT
GGGCGGGTACCCATTTGGAGGGATGGAGGAGGGACGTGAATATTGCAGGT
GCCAGTGTATAGAGAACATTAACCTGATAGGTGTCACCAGCCACTGATCC
AGAGAAGGAATGCATAATACACATAAAGACATGTTGGAGTGGCTTAGGGG
AGAAGGAAGCAGATAAGCGCCCAAAGCAGGACCTCAAGTCCAGAAAGAAG
ATCAGGGCCTTTTCACCCAAGCATAGACCAGGACTCAACAGAACATGCTG
GTTGGAAAGTCTTTTGTACACGTTCAGAGACATCTGATTTGAACCCAGAA
CTACTGCTCATCCCTACAGTCCTTGCACAAGTTAGCTACCACCTAAGAGC
CTCACGTCCTTCGTCCATAAGATAGGAATGCTCACACTCCCTTGCCAAGT
AACCGAGACGTTGAAATTCGATTTCGCACAGGCCCAGTCTTGCCACAGAA
AATTTTTTTCCATGGCTTCGGTTCACAGGCAAACCTTTTAACCACTTCAT
ATTTTATCCATGTTAAATTTTTCCTATAAAAATATTCTAACTTGGGCCCC
CCCTTTATTCTTATCTTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTAGGTTAGCTGTGGTTCCCTTCTGTG
TTCTCAGACAGGATGTTGGCTCCAAGGGTGGCTTTTCACCTGGCTGGCAG
CAGGAAGCTTTAGGCTTTGGGTCTCTCCATGGCAGTACCCTCCTCCTGCA
GCTCANTGCCCCAAAGGGAGAAGAAACAGGAACCTTCACAGGGATTTTTC
TGAATTGCCTATGAAACCAAGACAGTTGCGGCCGGGGGTGGGGCGAGAGG
GCGGAGGGGGTGGTGTTTGTCGGGGGGGGCGGGGGGGGGGGGGGCGGGGG
GGGCGGGGGGGGCTCCTACANNTTNTATAAATATACCCCGTGGGTCGTGT
GGGGGGGGGGGGGGGCGGGCGGGGGGGGGGGGGGGGGGGCGGGGGGGGTA
TTTTCNTNAAATATTTTTTTCTTTTCTTTTTTTTTCTTGTGGGGGGGGGG
GGGGCGGGGNNNCTTNCTTTTGTTTAAAAAATTCTTTTTTTTTTTNNNNT
NTTTTNNNTTTTTTATTATAGAAGAAAGAATCCGGGNTTTNNNNNNNNNN
NNTTNNTTNTTTTTTNNNTNNNNTTTTTTTTNNTNNTTTTTTTTTGTTTT
GTGGGGTTTTCCNGTNTTTGGAAAAAAGTNNNTGNGGGGGTGGGGGAGGG
GTGTTTTTTCANNNNNNNNNNNNNNNAAANNNNNNNTNNNTTNTTTTNTN
NTNNNTTTTTTTTTTTTTTTATTTTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no408_a18.b1 MSMg01no408_a18.b1 CHROMAT_FILE:
MSMg01no408_a18.b1 PHD_FILE: MSMg01no408_a18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:53 2005
         (473 letters)



>mm_chr8_106650220_106651092
          Length = 873

 Score =  833 bits (431), Expect = 0.0
 Identities = 458/467 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctgtctccacagggacttctgtcatccgtgtgacagcagtggatgcagatgac 64
           ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctctctccacagggacctctgtcatccgtgtgacagcagtggatgcagatgac 264

                                                                       
Query: 65  cccactgtggccggccatgccactgtcttgtaccaaatcgtgaaaggaaatgagtatttc 124
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cccactgtggccggccacgccactgtcttgtaccaaatcgtgaaaggaaatgagtatttc 324

                                                                       
Query: 125 agcattgataattctggtctgtatgactaaaccttttgggcgggtacccatttggaggga 184
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 325 agcattgataattctggtctgtatgactaagccttttgggcgggtacccatttggaggga 384

                                                                       
Query: 185 tggaggagggacgtgaatattgcaggtgccagtgtatagagaacattaacctgataggtg 244
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 385 tggaggagggacgtgaatattgcaggtaccagtgtatagagaacattaacctgataggtg 444

                                                                       
Query: 245 tcaccagccactgatccagagaaggaatgcataatacacataaagacatgttggagtggc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 445 tcaccagccactgatccagagaaggaatgcataatacacataaagacatgttggagtggg 504

                                                                       
Query: 305 ttaggggagaaggaagcagataagcgcccaaagcaggacctcaagtccagaaagaagatc 364
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttaggggagaaggaagcagacaagcgcccaaagcaggacctcaagtccagaaagaagatc 564

                                                                       
Query: 365 agggccttttcacccaagcatagaccaggactcaacagaacatgctggttggaaagtctt 424
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggggccttttcacccaagcatagaccaggactcaacagaacatgctggttggaaagtctt 624

                                                          
Query: 425 ttgtacacgttcagagacatctgatttgaacccagaactactgctca 471
           |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttgtacacattcagagacatctgatttgaacccagaactactgctca 671


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space:   399569
Effective search space used:   399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)