BAC Information

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BAC

Clone NameMSMg01-408F07
Chromosome8 (Build37)
Map Location 16,564,348 - 16,564,480
singlet/doubletsinglet
Overlap geneCsmd1
Upstream geneEG665619, LOC634008
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-408F07.T7 (MSMg01no408_f07.b1)MSMg01-408F07.TJ (MSMg01no408_f07.g1)
ACCAG506074AG506075
length745670
length of high quality
(start - end)		505 (48 - 552)133 (84 - 216)
definitionCHROMAT_FILE: MSMg01no408_f07.b1 PHD_FILE: MSMg01no408_f07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:16 2005CHROMAT_FILE: MSMg01no408_f07.g1 PHD_FILE: MSMg01no408_f07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTTTCTAGTATATAGACCACTGAAATGGAAAAACAGGACTTT
TATACATACAAGTCAACAACTGTATTATTAGTGAATTATTGAGAAATAAT
CTAAATATAACTGTATATTATACAATAGTTTCATAGAATAGTCCATTAAA
ATTCATTTTTCTTTACTTTTTCAAACACAAAAAGAATGAGCACCCATAAC
CCTCTTACTGTAGGATTAATCGTTTGTCTATTTTTATTCAATCTGGCGCT
AAGACATGAGAACCTAGGGAAGAACGTTGTCTAAGGACAGCCAGAAACAA
ACTAGGAAAAAATAGACTCTATGGAACACGTTTGCACAGAATAACAAATA
GTTTCCAAAATTCTCCTCAGCTTCTTCCAAATTTCCTTTTCTTGGCTTCA
TTAAGCAGGACCTTGCCCTTCTCTGACTAAGCCTCTGTCAGTTGTAGCTC
TCTGCTATGTGTGTGTTTCTTCAGCCAAATTCCCCCAATTGTTCTTGGAA
GTCTATTTTGGTCTAGCTTTACATTCTTGTCACCTATTGCTATTTCTTTT
GAAATACTTGTTATGATCTTTCTTTTGAATTTTCTTTCTCAACTTTTTTT
TCTAGACATGTGTTTATGCTGTGGCAACTTCTAAAAGACAATGGGTATGG
ATAATGAAAAGCCCCTGGGATAGCAAAGGAATTGAATGGCCTGGT

CAAAANCACGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAACACATTAAAATTA
TGTTTTCTTTTCATCCTTTTAATTTGGCTACTAGAAAATTAAATATGTGC
CTTGTTTTGGTGGCTCTCACAACATAAATGACAGCAGTTGAATGATGGCT
TTAATAAATTAATAGATTTAATTTAAAAATGATAANNNNNNANNTACNAA
CNCTAAAGGAGGGTACATTGGTGTGNNGCTANCANAACNAAAATCNNCAA
ATGGGGGCGGGGGGGGGGGTCGGCGTTTCGAANACAAAANACTTGGGNTT
TACTAGNGTCCATCCGNTCTCAGAGGTTATACGGGGGGCGGGGGGGAGGA
CGGCAAAAACAAAAAGGTGGNGAAAAAAAAAAAATTAATTTTTTGTTACG
GGGGGGGGGGGGGGGNNNNNCNNNNNNNNNNNNNNNAAAAAAAAAANNNN
NNNNNNGNGTTTNNNNNNNTNNNTATANNCCAAAAAAAAGAGGATTGGGG
GGGTTTTTTGTTTTTTCCTNTTTTTTTTTTTTTTTAAAAAAAAAAAAAAA
TAGTTTTTTTGANNNNNAAAAANNNTNNNNNNAAAAAAAAATAAAAAAAA
TTGGTTGTTTTATGGTGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no408_f07.g1 MSMg01no408_f07.g1 CHROMAT_FILE:
MSMg01no408_f07.g1 PHD_FILE: MSMg01no408_f07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:16 2005
         (133 letters)



>mm_chr8_16564148_16564680
          Length = 533

 Score =  257 bits (133), Expect = 2e-73
 Identities = 133/133 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataacacattaaaattatgttttcttttcatccttttaatttggctactagaaaattaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataacacattaaaattatgttttcttttcatccttttaatttggctactagaaaattaaa 260

                                                                       
Query: 61  tatgtgccttgttttggtggctctcacaacataaatgacagcagttgaatgatggcttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatgtgccttgttttggtggctctcacaacataaatgacagcagttgaatgatggcttta 320

                        
Query: 121 ataaattaataga 133
           |||||||||||||
Sbjct: 321 ataaattaataga 333


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 133
Length of database: 533
Length adjustment: 8
Effective length of query: 125
Effective length of database: 525
Effective search space:    65625
Effective search space used:    65625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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