BAC Information

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BAC

Clone NameMSMg01-408F23
Chromosome8 (Build37)
Map Location 123,154,846 - 123,297,514
singlet/doubletdoublet
Overlap gene1190005I06Rik, Cox4nb, Cox4i1, Irf8
Upstream geneKcng4, Wfdc1, Atp2c2, 4632415K11Rik, Cotl1, BC025816, Usp10, Crispld2, Zdhhc7, 6430548M08Rik, 1700120B06Rik, Gse1, 4833427B12Rik, LOC668301
Downstream geneLOC100042333, Foxf1a, Mthfsd, Foxc2, Foxl1, 1700018B08Rik, Fbxo31, Map1lc3b, Zcchc14, Jph3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-408F23.T7 (MSMg01no408_f23.b1)MSMg01-408F23.TJ (MSMg01no408_f23.g1)
ACCAG506106AG506107
length777790
length of high quality
(start - end)		454 (42 - 495)389 (75 - 463)
definitionCHROMAT_FILE: MSMg01no408_f23.b1 PHD_FILE: MSMg01no408_f23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:20 2005CHROMAT_FILE: MSMg01no408_f23.g1 PHD_FILE: MSMg01no408_f23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,154,846 - 123,155,296)(123,297,126 - 123,297,514)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAGCGCTAGCTCCGGCTACATAGGAAGCTTGAGGCCTGAGTGAGCCAAGT
GAGACCTGGTCTCAAGAGAACTCCCTCCTCCTCCTACTGAGGTGTGAGGT
CAAAGGTCATCCATCCCTCGGACCGTTTTCAGTTCAGCTAGTACAGTGGC
AGCAGGCAAACAGAGGGAAGGGGCAGGCTGCAGGTTGTCCTGAAGAACAG
GAGGGGTCCTGGGCATGAAGTCTCTCGCTTTATACCTTTGCAGGGTGAAG
AGCTTCCCTTTAGAGTAACTGGGCTCTGTTTATAGTCCCTTCAGAACAAT
GGGCTTGGAGACATAAAACCTTATCACCAAATGGTCCCCAGATCCTCCCC
AATGACAAGCAGGCAGACCCACTTCCTCTTGCAGGATCTACTCCCCCATA
AGCAGGGGTGAGGGAGGGATGGCTCACCCACTGTACTGCACAAGACCCAG
CCAAGGCTCTGAGAAGAACCTCAGAAAGAGGGCAGCGAGGGCTTCTCTGG
GCCTCGCAGACTAATTACATCAGAAGTCACTTCGGCACCTGGTTTCACCA
GGTTTGCAACACACGGAAAAAAAGCCGGACCGTCTCCTGATGTGCACCTG
CTTGGAAAGGAGGCCCTGGGCCTGGTTGGGGGAAACAAATTATTTTCCTT
TTTATTTACTCTTTATCGCTGTTCTCTTTCCTATTTTTCCACCNTGTTTC
CCCTTTTTTCTCTCTTTCCACTCTTTT

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGCCCACGATCTCCTGTCTCACCCCA
ACGCTGGGCAATGAAGAGGGTGCTCCCTCATGGAGAGGTCCTCCCTCATG
AGAGGGTGCTCCCTCATGAAGATGGTGTGGAGCACTTTGGTCAATACCCA
TCAGAGAAGATAGGGGGCTGGGGAAGGAGACACAGGGCCCCACCCTGCGT
CATGTGGACAACACACAAGGGATCAGGAGCCGGGAATATAGAAGTCAGTG
GAGGTGGAAGCGACAGAGAGCCAGAGTCTCCCCAGAGCACTCACTTGAGT
GGTCTTAGGCAAGCTGCCCAGCTCTTCTGAGTCTTGGTTTTTCCATCCGT
GAAATGAGAATAGTGAAGAGACCATGACCTTGTCTCCCTGGAAACTGTAT
CTAAACTCAGGACCAGTTACAATGCTGGGGACAGAGTAGTGAGGAATTTC
GGGAAGTGGGATGAAGTTAGTAGTAACCCAGCAGTTTTGAGATGGGTTGT
TTTTAAGACATCCTGGGGGACCATTAAATTTTCTATTTGTGGAAAGGGGA
ATGAAAAAGTTTGAATTTTTTGGCTGTCTCCCCATCTGGTCCCCGAACAT
AAAATACTTATTTTCTCCCTATATCTCTGGCGAAACCTCAACAGGTTGTG
TTTCTTTTTTCCCTCTCTTTGTCACCCCCTTTTCACCCGCTTTTTTTTTT
TTCTAAAATTACCTTTTCCTTTTTGTTTCGTGTCCAAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no408_f23.b1 MSMg01no408_f23.b1 CHROMAT_FILE:
MSMg01no408_f23.b1 PHD_FILE: MSMg01no408_f23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:20 2005
         (454 letters)



>mm_chr8_123154643_123155496
          Length = 854

 Score =  849 bits (439), Expect = 0.0
 Identities = 448/451 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagcgctagctccggctacataggaagcttgaggcctgagtgagccaagtgaga 63
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagcgctagcaccggctacataggaagcttgaggcctgagtgagccaagtgaga 263

                                                                       
Query: 64  cctggtctcaagagaactccctcctcctcctactgaggtgtgaggtcaaaggtcatccat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cctggtctcaagagaactccctcctcctcctactgaggtgtgaggtcaaaggtcatccat 323

                                                                       
Query: 124 ccctcggaccgttttcagttcagctagtacagtggcagcaggcaaacagagggaaggggc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ccctcggaccgttttcagttcagctagtacagtggcagcaggcaaacagagggaaggggc 383

                                                                       
Query: 184 aggctgcaggttgtcctgaagaacaggaggggtcctgggcatgaagtctctcgctttata 243
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 384 aggctgcaggttgtcctgaagaacaggaggggtcctgggcatgaagtctctcgctttaca 443

                                                                       
Query: 244 cctttgcagggtgaagagcttccctttagagtaactgggctctgtttatagtcccttcag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cctttgcagggtgaagagcttccctttagagtaactgggctctgtttatagtcccttcag 503

                                                                       
Query: 304 aacaatgggcttggagacataaaaccttatcaccaaatggtccccagatcctccccaatg 363
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 504 aacaatgggcttggagacataaaacctcatcaccaaatggtccccagatcctccccaatg 563

                                                                       
Query: 364 acaagcaggcagacccacttcctcttgcaggatctactcccccataagcaggggtgaggg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 acaagcaggcagacccacttcctcttgcaggatctactcccccataagcaggggtgaggg 623

                                          
Query: 424 agggatggctcacccactgtactgcacaaga 454
           |||||||||||||||||||||||||||||||
Sbjct: 624 agggatggctcacccactgtactgcacaaga 654


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space:   374736
Effective search space used:   374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no408_f23.g1 MSMg01no408_f23.g1 CHROMAT_FILE:
MSMg01no408_f23.g1 PHD_FILE: MSMg01no408_f23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:20 2005
         (389 letters)



>mm_chr8_123297052_123297840
          Length = 789

 Score =  714 bits (369), Expect = 0.0
 Identities = 384/389 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcccacgatctcctgtctcaccccaacgctgggcaatgaagagggtgctccctcatgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tgcccacgatctcctgtctcaccccaacgctgggcaatgaagagggtgctccctcatgga 404

                                                                       
Query: 61  gaggtcctccctcatgagagggtgctccctcatgaagatggtgtggagcactttggtcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 gaggtcctccctcatgagagggtgctccctcatgaagatggtgtggagcactttggtcaa 344

                                                                       
Query: 121 tacccatcagagaagatagggggctggggaaggagacacagggccccaccctgcgtcatg 180
           |||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 343 tacccatcagagaaggcagggggctggggaaggggacacagggccccaccctgcgtcatg 284

                                                                       
Query: 181 tggacaacacacaagggatcaggagccgggaatatagaagtcagtggaggtggaagcgac 240
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 283 tggacaacacacaagggatcaggagccgggaatatagacgtcagtggaggtggaagcgac 224

                                                                       
Query: 241 agagagccagagtctccccagagcactcacttgagtggtcttaggcaagctgcccagctc 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 agagagccggagtctccccagagcactcacttgagtggtcttaggcaagctgcccagctc 164

                                                                       
Query: 301 ttctgagtcttggtttttccatccgtgaaatgagaatagtgaagagaccatgaccttgtc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 ttctgagtcttggtttttccatccgtgaaatgagaatagtgaagagaccatgaccttgtc 104

                                        
Query: 361 tccctggaaactgtatctaaactcaggac 389
           |||||||||||||||||||||||||||||
Sbjct: 103 tccctggaaactgtatctaaactcaggac 75


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 789
Length adjustment: 9
Effective length of query: 380
Effective length of database: 780
Effective search space:   296400
Effective search space used:   296400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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