BAC Information

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BAC

Clone NameMSMg01-408J18
Chromosome8 (Build37)
Map Location 36,147,938 - 36,368,158
singlet/doubletdoublet
Overlap geneLOC666797, LOC666804
Upstream geneDctn6, LOC100042777, Mboat4, Leprotl1, LOC666694, Tmem66, LOC619780, LOC666718, EG234159, LOC666746, Dusp4, LOC675578, Tnks, LOC666792
Downstream genePpp1r3b, Thex1, Mfhas1, LOC100041572, Gm501, Cldn23, LOC671641, D8Ertd82e, Lonrf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-408J18.T7 (MSMg01no408_j18.b1)MSMg01-408J18.TJ (MSMg01no408_j18.g1)
ACCAG506288AG506289
length856797
length of high quality
(start - end)		253 (64 - 316)359 (71 - 429)
definitionCHROMAT_FILE: MSMg01no408_j18.b1 PHD_FILE: MSMg01no408_j18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:38 2005CHROMAT_FILE: MSMg01no408_j18.g1 PHD_FILE: MSMg01no408_j18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,367,907 - 36,368,158)(36,147,938 - 36,148,296)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAGATCCGCGGAATTCA
GCTTAATTCCGACTGATCCCAGTGGAATTAGCTTACCACTGACTAAAATC
TTCCTATTTCTTCACTTGTATCCTGCCTTACTTCTCTAGACAACATGCAC
TGGCTCCTGTCCAAGCCCATTGAGAAGAGTGACTGTTTCAGTGTCTATGT
CGTTTTCTGCACATAGCGGTACATACGTCTTCTCAACAACCAACCCCTGA
ATGAAGGGGACAGTGGCAGGACAGGCAGATGAAATTTATACAAATGACAA
CTACCTCTGCCTTTCTCGTAGTTGAAGTCATGGGAATGAACTATCCATTT
GCACTAACTTGTGCTCATAGAGTCTTAGTTACTGGTCCACTGCCGCGAGG
ATATACCACCACCCCCCCAATTCTTATAAAAAATAAGAATGTGTTTTCTT
TTTACTAAGTCATACTCATGATCCTTCATTGGTCCGCCTTTACATAATTT
TCGCTCGTCTTATCCTTATCTCGCTCATTTCTTCCCATTCCTCTTTTCTT
TTTCTTTCTTTCTACTTCTCCTCTATCATCCTTTTTCACATCTGTATCCC
TCCGCTAGTTTATCACAACTTTCTCACATTATTTTTATCCCACCTTCGTT
TCTATCCTCTCTCCTTTTTCCGCTCTCCTCTTTTTCCTTCTTTCCCCTCT
GTCCCCCTTCATCCCCCTTCTTTCTCTCTTCCCCACCACTCCTCTTATTT
CCCTCTCTTTCACCCAATTTCCCTTATCCTTTACCTTACCTTGCTCTCCT
CTCCTCTCTTACCTCTATTCCCTTTCTTTTTCTTATTCCCCTCTTCTTTC
TCTCTN

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATTTCTCTCAGCTTCCTGACTGTGGATGCA
ATGTGACCAGCTGCCTCAGGCTCCTACCGCCGTGCCTTCCCAGTTACAAT
GGACTGTACCCTTAAACTAAGGTGTGACCAGGTAATTTGTCATAGCAACA
AGAGAAATAATTAATACATCAGGCAAGGAGATGTTTAGCAGGGATTTTTA
GAGAAGGGGAAATTGCAGAATTTGTTCAGCTGAGATCAGTTGCCTTCGAC
ATGAAGAGGCACCATACTGATTATGCTGCTCCTCAATCCATGAAGACACT
ATCTTCCACCTAGCTATTGACTTAGACATCGTGGTAAATATGGTGAATCT
TACATACCGACCGCCTGTCTTTTTCCTGTGATTCTTTATCATCCCTCACT
CCTTATAACAAGGAAATTATGTACTGGTTATGAAGGCTTTGCACTACCCT
CTCCTTCTCTTAATAAACTATTACTCTTTCGCTCCTTCATTTTCATACTC
ACTTTTTTATTTTTTTTATATATCTCCCTCTCCTTTCTTCTATCCATACT
ACTTTACTATTATTATCCATATCTCCTTGATTCTTTTTATTATCCTCCTT
TTTCTTTTTCTTTCTTTTTTCTCATTGCGAATTTCCTATCTTTTTCCTCC
ACACTTCCCCATATATTATTTCCATTTTCTTCTTTACAATTATCCTTCTT
CTTCTCCATTTTTTCCTCCTTTCTATCCCCTATCTCTCCTTTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no408_j18.b1 MSMg01no408_j18.b1 CHROMAT_FILE:
MSMg01no408_j18.b1 PHD_FILE: MSMg01no408_j18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:38 2005
         (253 letters)



>mm_chr8_36367707_36368359
          Length = 653

 Score =  472 bits (244), Expect = e-138
 Identities = 250/252 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgatcccagtggaattagcttaccactgactaaaatcttcctatttcttcacttgtatcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 tgatcccagtggaattagcttaccactgactaaaatcttcctatttcttcacttgtatcc 393

                                                                       
Query: 61  tgccttacttctctagacaacatgcactggctcctgtccaagcccattgagaagagtgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tgccttacttctctagacaacatgcactggctcctgtccaagcccattgagaagagtgac 333

                                                                       
Query: 121 tgtttcagtgtctatgtcgttttctgcacatagcggtacatacgtcttctcaacaaccaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttcagtgtctatgtcgttttctgcacatagcggtacatacgtcttctcaacaaccaa 273

                                                                       
Query: 181 cccctgaatgaaggggacagtggcaggacaggcagatgaaatttatacaaatgacaacta 240
           |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 272 cccctgaaggaaggggacagtggcaggacagggagatgaaatttatacaaatgacaacta 213

                       
Query: 241 cctctgcctttc 252
           ||||||||||||
Sbjct: 212 cctctgcctttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 253
Length of database: 653
Length adjustment: 9
Effective length of query: 244
Effective length of database: 644
Effective search space:   157136
Effective search space used:   157136
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no408_j18.g1 MSMg01no408_j18.g1 CHROMAT_FILE:
MSMg01no408_j18.g1 PHD_FILE: MSMg01no408_j18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:38 2005
         (359 letters)



>mm_chr8_36147738_36148496
          Length = 759

 Score =  656 bits (339), Expect = 0.0
 Identities = 354/359 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttctctcagcttcctgactgtggatgcaatgtgaccagctgcctcaggctcctaccgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttctctcagcttcctgactgtggatgcaatgtgaccagctgcctcaggctcctaccgc 260

                                                                       
Query: 61  cgtgccttcccagttacaatggactgtacccttaaactaaggtgtgaccaggtaatttgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgtgccttcccagttacaatggactgtacccttaaactaaggtgtgaccaggtaatttgt 320

                                                                       
Query: 121 catagcaacaagagaaataattaatacatcaggcaaggagatgtttagcagggattttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catagcaacaagagaaataattaatacatcaggcaaggagatgtttagcagggattttta 380

                                                                       
Query: 181 gagaaggggaaattgcagaatttgttcagctgagatcagttgccttcgacatgaagaggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagaaggggaaattgcagaatttgttcagctgagatcagttgccttcgacatgaagaggc 440

                                                                       
Query: 241 accatactgattatgctgctcctcaatccatgaagacactatcttccacctagctattga 300
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 accatactgaggatgctgctcctcaatccatgaagacactatcttccacctagctattga 500

                                                                      
Query: 301 cttagacatcgtggtaaatatggtgaatcttacataccgaccgcctgtctttttcctgt 359
           ||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||
Sbjct: 501 cttagacatcgtggtaaatatggtgaatcttacataccgactgcttgtttttttcctgt 559


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 759
Length adjustment: 9
Effective length of query: 350
Effective length of database: 750
Effective search space:   262500
Effective search space used:   262500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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