BAC Information

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BAC

Clone NameMSMg01-408P08
Chromosome8 (Build37)
Map Location 107,598,178 - 107,765,287
singlet/doubletdoublet
Overlap geneEG13909, LOC667774, BC026374, LOC100042408, Cbfb, D230025D16Rik
Upstream geneCdh5, Bean, Tk2, Cklf, Cmtm2a, Cmtm2b, Cmtm3, Cmtm4, Dync1li2, Ccdc79, Appbp1, Car7, LOC628007, 4833426J09Rik, Cdh16, Rrad, 1110019N10Rik, EG637550, LOC382052, LOC100041473, Ces6, LOC628050, 4932416K20Rik, BC015286, Matr3-ps2, Ces2, LOC667754, LOC667760, Ces5, 2310038E17Rik, 2210023G05Rik, LOC436058, EG436059, Es31
Downstream geneC76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-408P08.T7 (MSMg01no408_p08.b1)MSMg01-408P08.TJ (MSMg01no408_p08.g1)
ACCAG506556AG506557
length753795
length of high quality
(start - end)		455 (38 - 492)389 (76 - 464)
definitionCHROMAT_FILE: MSMg01no408_p08.b1 PHD_FILE: MSMg01no408_p08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:07 2005CHROMAT_FILE: MSMg01no408_p08.g1 PHD_FILE: MSMg01no408_p08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,598,178 - 107,598,622)(107,764,986 - 107,765,287)
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGA
ATTCTACACAAAGCTTAAGTATAGGAGACATCAAAGCCCAACCCCACAGT
GATACACCCTTTCCAACAAGGCCACACCTACTCCAAACATGCCATACCTC
CTAGTAGTGTTATTCCCTGTAGCCCAAGCATTCAAACACATGAGTCTATG
AGGGTCAAACCTATAAAACCAACACACACATAATTAAAAATAAAAATAAG
TCCAAAAAATGAAATCAATCTCTACCTCTGGTGTCTTGGAAGCCTTAATA
GGATGGTAAGGCTTTGTGAGCCCAGGTTCATTCACTATCCATCACAATTT
GAAACTCTTTCCTTGCCTCCTATAGCATTAACATCAATGACAGGAAGAAC
TAAAGAGACAAAGAGACCCTCGAGGCTATTCTATACAACACATCAGAAAG
GATGCTGACAATCCTGGGATCTGTGAATGATAAAGAAATCACCACCAGAT
GTCTTACCAATACAACTCCATAAACATAGCCTGAATGATGCTTCTTTCTA
TATGTGAAGTCACCTCAAAGCTTGGCTTTTTTTCTCTAACTTTACCCTTC
TCAGGCCTAACCCTGGTTTTTCCCCATGGTCTAAATACCCGTTTTGACCT
CTTAAATATATGTTTCCTCCGCCCTTGTTTTTCTTCTTTTTTTTGCGTTA
TTCGCTCTGTCCCCACCCCTCATTTTTCTTTCTTTTTTTCTCCTTTTTTT
CTG

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATAGCAATGAGGGTTTCTCTGTGTA
GCCCTGGCTGTTCTGGAACTTGCTGTGTAGACCAAGTCCACCTATCTCTA
TGGGAATTAAAGACATGTGCCGCTGCCTCCTGACCAAATCTGAACCAGTT
AAGGTGAAGGTACTAGAAGCTCTGTCTTCTGGGAGGTTGAGATCTCACAA
TTAGAATTAGTGTCCATACAAGGAAACCCTTGAGATTTTATGGGCCCTTT
CCAACACAGGAATGTAACAATGATTTTGTCTACAAATCAGGAATGAGCAC
TCAGCACATACTTCAAGTAGCAGAAGAGTCTACACCGATAAGATATAATG
GAGAACCTACCTGCAGCGAGCAAGCGAAGTCGCAACCCTGAGGGCCCAGT
TCCATCTCGAAGAACATCTACACTTTCAGCATATACATTCCCCAGGAAAC
AGCTCAAGGGCATCACAGGAGCCCTGGAGAATGCACAGAATGAACATTGG
TTTGGTCCCTGTTTTCAGAAAGCCCCGGGGCCCACTAAATAGCTCACGGT
TCCTCGCATTCTCTTGGGATACTGTAGATTTGTGCCCACCCATTATTGTA
TTTTTTTTTTTCCATTTTCCCCTTTTGTGTGCATTTTCTATACTACTCCC
AACCTTGTTTTACCTTTTGGTCTCTTATTACACTTTCTCATTTCTCTTAC
ACTTCTTTCGATCTGCTCCTCTCACCTTTGTGCTCCTTTTTTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no408_p08.b1 MSMg01no408_p08.b1 CHROMAT_FILE:
MSMg01no408_p08.b1 PHD_FILE: MSMg01no408_p08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:07 2005
         (455 letters)



>mm_chr8_107597968_107598822
          Length = 855

 Score =  783 bits (405), Expect = 0.0
 Identities = 435/445 (97%)
 Strand = Plus / Plus

                                                                       
Query: 11  ggaattctacacaaagcttaagtataggagacatcaaagcccaaccccacagtgatacac 70
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 ggaattctacacaaagcttaagtataggagacatcaaagcccaaccccacagtgatacac 270

                                                                       
Query: 71  cctttccaacaaggccacacctactccaaacatgccatacctcctagtagtgttattccc 130
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 cctttccaacaaggccacacctactccaaacatgccatacctcctagtagtgttattccc 330

                                                                       
Query: 131 tgtagcccaagcattcaaacacatgagtctatgagggtcaaacctataaaaccaacacac 190
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 331 tgtagcccaagcattcaaacacatgagtctatgagggccaaacctataaaaccaacacac 390

                                                                       
Query: 191 acataattaaaaataaaaataagtccaaaaaatgaaatcaatctctacctctggtgtctt 250
           |||||||||||||||||||||||||||||| ||||| |||||||||| ||||||| ||||
Sbjct: 391 acataattaaaaataaaaataagtccaaaagatgaagtcaatctctaactctggtatctt 450

                                                                       
Query: 251 ggaagccttaataggatggtaaggctttgtgagcccaggttcattcactatccatcacaa 310
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 ggaagccttaataggatggtaaggctttgtgagcccaggttcattcactatccatcacaa 510

                                                                       
Query: 311 tttgaaactctttccttgcctcctatagcattaacatcaatgacaggaagaactaaagag 370
           |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 511 tttgaaactctttccttgccacctatagcattaacaccaatgacaggaagaactaaagag 570

                                                                       
Query: 371 acaaagagaccctcgaggctattctatacaacacatcagaaaggatgctgacaatcctgg 430
           ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 acagagagaccctcggggctattctatacaacacatcagaaaggatgctgacaatcctgg 630

                                    
Query: 431 gatctgtgaatgataaagaaatcac 455
           ||||||||||| |||||||||||||
Sbjct: 631 gatctgtgaataataaagaaatcac 655


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 855
Length adjustment: 10
Effective length of query: 445
Effective length of database: 845
Effective search space:   376025
Effective search space used:   376025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no408_p08.g1 MSMg01no408_p08.g1 CHROMAT_FILE:
MSMg01no408_p08.g1 PHD_FILE: MSMg01no408_p08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:08 2005
         (389 letters)



>mm_chr8_107764499_107765287
          Length = 789

 Score =  538 bits (278), Expect = e-157
 Identities = 296/302 (98%)
 Strand = Plus / Minus

                                                                       
Query: 88  acatgtgccgctgcctcctgaccaaatctgaaccagttaaggtgaaggtactagaagctc 147
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 acatgtgccgctgcctcctgaccaaatctgaaccagttaaggtgaaggtactagaagctc 730

                                                                       
Query: 148 tgtcttctgggaggttgagatctcacaattagaattagtgtccatacaaggaaacccttg 207
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 tgccttctgggaggttgagatctcacaattagaattagtgtccatacaaggaaacccttg 670

                                                                       
Query: 208 agattttatgggccctttccaacacaggaatgtaacaatgattttgtctacaaatcagga 267
           |||||||||||||||||||||||||||||||||||||||||   ||||||||| ||||||
Sbjct: 669 agattttatgggccctttccaacacaggaatgtaacaatgaacatgtctacaactcagga 610

                                                                       
Query: 268 atgagcactcagcacatacttcaagtagcagaagagtctacaccgataagatataatgga 327
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 atgagcactcagcacatacttcaagtagcagaagagtctacaccgataagatataatgga 550

                                                                       
Query: 328 gaacctacctgcagcgagcaagcgaagtcgcaaccctgagggcccagttccatctcgaag 387
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 549 gaacctacctgcagcgagcaagcgaagtcgcaaccctgagggtccagttccatctcgaag 490

             
Query: 388 aa 389
           ||
Sbjct: 489 aa 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 789
Length adjustment: 9
Effective length of query: 380
Effective length of database: 780
Effective search space:   296400
Effective search space used:   296400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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