Query= MSMg01no410_c03.b1 MSMg01no410_c03.b1 CHROMAT_FILE:
MSMg01no410_c03.b1 PHD_FILE: MSMg01no410_c03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:46 2005
(363 letters)
>mm_chr8_102525726_102526488
Length = 763
Score = 557 bits (288), Expect = e-163
Identities = 345/384 (89%), Gaps = 32/384 (8%)
Strand = Plus / Plus
Query: 5 gaattctacaaattagcagggttagtgacaaaaattcacactcctaactgcaaaggcttt 64
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctacaaatgagaagggttagtgacaaaaattcacactcctaactgcaaaggcttt 264
Query: 65 agtaatttatgtcaactgggaaaaagaagatcgttttttaccaattcagcattactggga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agtaatttatgtcaactgggaaaaagaagatcgttttttaccaattcagcattactggga 324
Query: 125 atatcaaccacacaccccttgttcagtagcagttggacaagtgtgtgtgtgtgtgtgtg- 183
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atatcaaccacacatcccttgttcagtagcagttggacaagtgtgtgtgtgtgtgtgtgt 384
Query: 184 -----------------------------catgtctgcatgtctgcatgcatacaaacct 214
|||||||||||||||||||||||||||||||
Sbjct: 385 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatgtctgcatgtctgcatgcatacaaacct 444
Query: 215 gtgcatctactcctattgttgttgttttgatcatgttttgttttcttgtttctgcttttt 274
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtgcacctactccttttgttgttgttttgatcatgttttgttttcttgtttctgcttttt 504
Query: 275 gttttgttttacacttttgccttttgttttgttttggttttggttttggttttgttttgt 334
||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct: 505 gttttgttttacacttttgccttttgttttgttttggtttttgtttttgtttt--tttgt 562
Query: 335 tttgttttgttttgttttgttttt 358
||||||||||||||||||||||||
Sbjct: 563 tttgttttgttttgttttgttttt 586
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 66
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 763
Length adjustment: 9
Effective length of query: 354
Effective length of database: 754
Effective search space: 266916
Effective search space used: 266916
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no410_c03.g1 MSMg01no410_c03.g1 CHROMAT_FILE:
MSMg01no410_c03.g1 PHD_FILE: MSMg01no410_c03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:46 2005
(522 letters)
>mm_chr8_102643952_102644874
Length = 923
Score = 934 bits (483), Expect = 0.0
Identities = 513/523 (98%), Gaps = 1/523 (0%)
Strand = Plus / Minus
Query: 1 cattttgcagtagtttcaaccctctgatgc-cacatgaaagaaacaacatttagtgaagt 59
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 723 cattttgcagtagtttcaaccctctgatgcacacatgaaagaaacaacatttagtgaagt 664
Query: 60 aaatactcatattgcttcacagctgcactgcaaggttgcctggctgcattactttgattc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 aaatactcatattgcttcacagctgcactgcaaggttgcctggctgcattactttgattc 604
Query: 120 ccaagtagaaaagcagggtattcagaccacacaacagaggaacctgtttacctcaggcag 179
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 603 ccaagtagaaaagcagggtattcagaccacacaacagaggaacccgtttacctcaggcag 544
Query: 180 ccaggaagcagagagatggaatatcttccctaacagccttcccttcccgtttcctttgtt 239
|||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 543 ccaggaagcagagagagggaatatcttccctaacagccttctcttcccatttcctttgtt 484
Query: 240 tcaactccttgtgcctgcagcttgttagatgttgatggcagcattgagggcagcttttga 299
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 483 tcaactccttgtgcctgcagcttgttagatgttgatagcagcattgagggcagcttttga 424
Query: 300 cccttaattaattgttcataaaaatacattcacatatcaacccataaatgaactttgtta 359
|||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 423 cccttatttaattgttcataaaaatatgttcacatatcaacccataaatgaactttgtta 364
Query: 360 cttacctacaggcttctcaatcccattgcattaataattgatactaacaataatgctaag 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 cttacctacaggcttctcaatcccattgcattaataattgatactaacaataatgctaag 304
Query: 420 aaatggtggtacatttctatatttcacaacatctgagtgactgaaataggggaatttgta 479
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 303 aaatggtggtacatttctatatttcacaacatctgactgactgaaataggggaatttgta 244
Query: 480 atgcaaagacagtgtcacatacagaggtgaagttcccctgcac 522
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 atgcaaagacagtgtcacatacagaggtgaagttcccctgcac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 923
Length adjustment: 10
Effective length of query: 512
Effective length of database: 913
Effective search space: 467456
Effective search space used: 467456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
