BAC Information

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BAC

Clone NameMSMg01-410I09
Chromosome8 (Build37)
Map Location 67,035,108 - 67,035,264
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC384831, EG244495, Tll1, LOC100040989
Downstream geneCpe, Sc4mol, Klhl2, LOC100040903, LOC619647, 3110005G23Rik, Trim75, Trim60, LOC665388, LOC665396, LOC100040949, LOC665405, Vaultrc-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-410I09.T7 (MSMg01no410_i09.b1)MSMg01-410I09.TJ (MSMg01no410_i09.g1)
ACCAG507752AG507753
length743737
length of high quality
(start - end)
157 (96 - 252)402 (76 - 477)
definitionCHROMAT_FILE: MSMg01no410_i09.b1 PHD_FILE: MSMg01no410_i09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:17 2005CHROMAT_FILE: MSMg01no410_i09.g1 PHD_FILE: MSMg01no410_i09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCCGCTTCCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGA
ATCGCGCGGAATCTTCCTGTTCCCAAACAAGTCTTANAGCANATACCACA
GAACAACTATAAATTGCCATTAGTCCATAGAGAACGCCTCTCTTCCTGGA
AGACTCTTGCAGCCTTTGTGCAAATCAGAGGGTAGAGCTAACATCCTGAA
AGGAACCCTGCCTCATACTAAACACAGGCCACAGCAGTACCCACCCCACT
TGAAGATTCTAATGGTTTTGCTGAAGAGCTCCAAAGAAGTCCAATGCTCC
TCCCCAAAATGCACAAATGCATTTAGGTCNGTTGAAAAGAGGCATGCTTC
TTCTAGGCATCCGAATCACCTGCATCCTCAGTCTTCGCTTACACATAATG
GCCAGCACTCAATGAAAGAACAGGTTACTACACCCAAAATAGTAACATTT
ATAAAGCACCTACTGTCAAACTAAAGACATCAACACCTATTCAAGAGATA
GCACACTAGATTATCTAGCATAGAAGGAGTCAAGTAGGTGCATATATAAA
TGGAAATGCCTATGACCAGAACGAGAACGACGAATAGGATGAGCATAATG
TACGAAGGTTTCTTCCTTTCCCTCTTCTCCTTCTATTTTTCCCTCCATTT
CTTTTTTTTTTTTCCCTTTCTACTCCGCTCTTTTCCCTTCTCTCTTTTTC
TATTCTCCACTATCCATACCTCTCTATTTCCTTTATCACTTTN
NTTTTACGATGATGTGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTACAGGAATTCTTGTCTGCCTCCTCCTCGCCCTT
CCTTTCCCTCCCCTCCCTTCCTTTATTCTCCTCCCCCCTCTTTTTCTAGA
CACTATCTCACTCAAGCCAAGTTGAAACTCACCAAGATTTGAATGTGATT
TTATTTTATTAAAAATTTTAATTAAAAATTGCCTATTTTATGTATACCAA
GTGTTTTGCCTACATCTCTGTTCGTGGAAGCTTGGTACCCTTGGTGTGAG
AAGAAGGCATCAGATCCCTTGTTTTTTTTAGTTCTGTATGGTGTGTGCAA
CCATGTGGGTGCTGGGAACTGAATCTAGGTCCTCTGCAGCAAGAGCAACA
AGTGCTCCTCACTGCTGACCCAGTCTCCAGTCCCATGCAGGTATTTTTAG
AATGAAGAAAGTGGGCTCTCTGCGAACATGATGGACACGAAATGAAAAAG
GATAAAGGAGAGCCATGTCCTTGGTAAGATACACACTTATGAAGTAGAGA
GTCAGATGCATGTGGATCTCTGTGAGTTCAAGGTTAGTCTGTTCTCCTGA
TCTGAGTTCCAGGACAGCCACCGTTACCCTTCAAAATCCCTGTCCAGACA
AGCATTTTCACTTTTCCTTAGTCCAATGCTATAGTCCTAAGAACGGATAC
ATCTTCTTCTATTACATCGACGTTTCTACTGTCATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no410_i09.b1 MSMg01no410_i09.b1 CHROMAT_FILE:
MSMg01no410_i09.b1 PHD_FILE: MSMg01no410_i09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:17 2005
         (157 letters)



>mm_chr8_67034908_67035464
          Length = 557

 Score =  281 bits (145), Expect = 2e-80
 Identities = 154/157 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccacagaacaactataaattgccattagtccatagagaacgcctctcttcctggaagact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccacagaacaactataaattgccattagtccatagagaacgcctctcttcctggaagact 260

                                                                       
Query: 61  cttgcagcctttgtgcaaatcagagggtagagctaacatcctgaaaggaaccctgcctca 120
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 cttgcagcctttgtgcaaatcagagggtagagctaaaatcctgaaaggaaccctgcctca 320

                                                
Query: 121 tactaaacacaggccacagcagtacccaccccacttg 157
           || ||||||||||||||| ||||||||||||||||||
Sbjct: 321 tattaaacacaggccacatcagtacccaccccacttg 357


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 157
Length of database: 557
Length adjustment: 8
Effective length of query: 149
Effective length of database: 549
Effective search space:    81801
Effective search space used:    81801
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)