BAC Information

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BAC

Clone NameMSMg01-411G22
Chromosome8 (Build37)
Map Location 33,487,513 - 33,487,914
singlet/doubletsinglet
Overlap genenone
Upstream gene7420700N18Rik, LOC100041329, EG330731, LOC100041340, Nrg1, 2010007E15Rik, EG666589
Downstream geneEG546052, LOC100042715, LOC628408, EG628412, Wrn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-411G22.T7 (MSMg01no411_g22.b1)MSMg01-411G22.TJ (MSMg01no411_g22.g1)
ACCAG508444AG508445
length927783
length of high quality
(start - end)
207 (47 - 253)402 (74 - 475)
definitionCHROMAT_FILE: MSMg01no411_g22.b1 PHD_FILE: MSMg01no411_g22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:28 2005CHROMAT_FILE: MSMg01no411_g22.g1 PHD_FILE: MSMg01no411_g22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAAACAGATCTCAGTTTTGTTTGTTTGGTTTGGTTTGGCTTGGTT
TGGTTTGGTTTGGTTTGGTTTGCATTGCATTGCATTGCATTGCATTGCAT
TGCATTGCATTGCATTGCATTGCATTGCATTGCATTGCATTGCATTGCAT
TGCATTGCATTGCATTGTATTGTATTGTATTGTATTGTATTGTATTGTAT
TGTATTGTATTGCATTGAATTAAATCGCACTCCATCCCTGCATACCTCTA
TCCCCCCCCCCCCCTTCCCCCCTTTTTTTTTCCCACATACAACCCCCCAC
CCCGTTCCCCACTTTCTTCCCCCCCCACTTCCCTATTTCCCTTTCACCAC
CCTTTCCCTCCTTTTCCCCCCCCCCCCCCCCCTTCCCCCCCACCTCCCCT
TCTTCATCTTCCTTCCTTACCTCCCTTCCCACTCCACCCCCCTATTTCAC
CTTACCCTTCTTTCTTTTCCCACACCAATCTCCATTTTTTTCCCCATATT
CCCCTTCTCTCATTCAACTTTTTTTTTCATATCACCCCATCCATCCTCCC
CCCTCCTTCCTATTCTCCCCCTTTAACACCCACATATCCCTCCTCCACCT
ACCTCCTCTCCTATCATCATCCCCTAAACAACTCTCCTTTACTACTCCTA
TATCCGTCTCCTTTAACCCTCCTATACCTACCAATCCTTCCCCACCTCTT
TCCCTTCCTTCCTTCCTCTCTATTCTCTCTTTTCTTTAACCCCACCCCAT
TTCTCCCTCACTACCATATCACATTATTCCTACCCGTACATCCCACACCC
TTCCTCCCCTTCTCCTTCCACAACCTTCTCTTTCCCTCCCCATCCATTCT
TACCACTTTCCATATTCCCTTACCCCC
NCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGGGCCTTCCGCACCCCTACTCCTTCC
TTATATCTACCCACCCCTTAAACAGCTGGTTATAAAAGTAACCCAACCAC
TGATTCCAAACCACAGATGCTCAGACCAAAAAAAGAGACCTCCTGGCGAA
GAGATGCTGAAATGAAACATCAGTCAGATCTGAATTTGACAGATGTTCTG
GGACGGAATCCAGTTAGTGAAACCACACACCATCAATGGAAGTCCCTAGT
TCACATGGTCTTTTCATGGTTAAGGAGAGGGAGAGAGAAAGACAGAGAAT
GACAGAGAGGGAGGGAGGGAAGAGGGAAAGAAGAAAGAAGGGAGGAAAAA
AGATCCACTTCTCTAANATCGTCTTTCTATTCCTCATTTATATACCCTGG
AGTCTGACAGCGTTACGAGCCTGTAAAACTCCTTTAGCTGTAAGATGGAT
GATTAACCTGCACTGCCCTTAATTAAATAAAAGATAATTGGAAAGGGAAA
AAGGAAACCAATTCTCTATTTGGAAGACCATGGGGGCAGGGATTTTATAA
TTCCCCCCCTTAAAAAGGGCTATTGGGTCATAATTTATAAGTTGCTTCTA
CTTAATCCTGAGGGGGGTTCTTTTCTTTCCCCCCCCATCCTTTACTTTAT
TATATAAGGTTCTCCAGGTCCTTTTTTTTTAAAACAATTGCGATAGCACT
ATTTTTTGGTCAAAATCCCCCCCTTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no411_g22.g1 MSMg01no411_g22.g1 CHROMAT_FILE:
MSMg01no411_g22.g1 PHD_FILE: MSMg01no411_g22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:28 2005
         (402 letters)



>mm_chr8_33487313_33488114
          Length = 802

 Score =  772 bits (399), Expect = 0.0
 Identities = 401/402 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agggccttccgcacccctactccttccttatatctacccaccccttaaacagctggttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agggccttccgcacccctactccttccttatatctacccaccccttaaacagctggttat 260

                                                                       
Query: 61  aaaagtaacccaaccactgattccaaaccacagatgctcagaccaaaaaaagagacctcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaagtaacccaaccactgattccaaaccacagatgctcagaccaaaaaaagagacctcc 320

                                                                       
Query: 121 tggcgaagagatgctgaaatgaaacatcagtcagatctgaatttgacagatgttctggga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggcgaagagatgctgaaatgaaacatcagtcagatctgaatttgacagatgttctggga 380

                                                                       
Query: 181 cggaatccagttagtgaaaccacacaccatcaatggaagtccctagttcacatggtcttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cggaatccagttagtgaaaccacacaccatcaatggaagtccctagttcacatggtcttt 440

                                                                       
Query: 241 tcatggttaaggagagggagagagaaagacagagaatgacagagagggagggagggaaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcatggttaaggagagggagagagaaagacagagaatgacagagagggagggagggaaga 500

                                                                       
Query: 301 gggaaagaagaaagaagggaggaaaaaagatccacttctctaanatcgtctttctattcc 360
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 gggaaagaagaaagaagggaggaaaaaagatccacttctctaaaatcgtctttctattcc 560

                                                     
Query: 361 tcatttatataccctggagtctgacagcgttacgagcctgta 402
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcatttatataccctggagtctgacagcgttacgagcctgta 602


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 802
Length adjustment: 9
Effective length of query: 393
Effective length of database: 793
Effective search space:   311649
Effective search space used:   311649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)