BAC Information

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BAC

Clone NameMSMg01-411H14
Chromosome8 (Build37)
Map Location 4,015,646 - 4,016,118
singlet/doubletsinglet
Overlap genenone
Upstream geneEG664801, EG209786, D630014A15Rik, Insr, A430078G23Rik, Arhgef18, Pex11c, 1700019B03Rik, Zfp358, Mcoln1, Pnpla6, C330021F23Rik, 2310057J16Rik, Xab2, Pcp2, Stxbp2, Retn, 1810033B17Rik, LOC664858, Trappc5, Fcer2a, Clec4g, Cd209a, LOC664870, Cd209e, Cd209d, Cd209b, Cd209c, LOC664888
Downstream geneEG384770, EG664905, LOC664915, LOC664922, LOC631071, Cd209f, Cd209g, B130050I23Rik, BC068157, Lrrc8e, Map2k7, LOC100039590, Snapc2, Ctxn1, Timm44, Elavl1, Ccl25, LOC664977, Ppia-ps8_36.1, Lass4, Vmn2r-ps89, EG633533, BC003267, LOC665021, EG623133, EG665044, EG623223, LOC100040234, Shcbp1, EG622568, LOC669393, EG631359, LOC100039687
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-411H14.T7 (MSMg01no411_h14.b1)MSMg01-411H14.TJ (MSMg01no411_h14.g1)
ACCAG508476AG508477
length753746
length of high quality
(start - end)
464 (69 - 532)474 (75 - 548)
definitionCHROMAT_FILE: MSMg01no411_h14.b1 PHD_FILE: MSMg01no411_h14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:32 2005CHROMAT_FILE: MSMg01no411_h14.g1 PHD_FILE: MSMg01no411_h14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:32 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTGATCTTTCCAAGACTTTTATCATGAGTGGGTGTTGGATTTTG
TCAAATACTTTGTCAGCATCTAATGAGATGATCATGTGATTTTTGTCTTT
GAGTTTGTTTATATACTGGATTACGTTGATGGATTTCCATATATTAAACC
TTCCCTACATCTCTGGGATGAAGCCTACTAGGTCATGATGGATGATCGTT
TTGATGTGTTCTTAGATTCAGTTTTCGAGGAATTTATTGAGTATTTTTGC
ATCGATATTCATAAAAGATTTTGGTCTGAAGTTCTCTTTCTTTGTTGGGT
CTTTATGTGGTTTAGGCATCAGAATAATTGTGGCTTCATAGAATGAACTG
GGTAGAGTACCTTCTGTTTCTATTTTTTGGAATAGTTTGAGGAGAATTGC
AATTAGGTCTTCTTTGAAGGTCTGATAGAATTCTGCACTAAACCCATCTG
GTCCTGGGCTTTTTTTGGGGGGGGGTTGGGAGATTATTAATGNCTCTTTT
TATTTTNNTTTTTTCCCTGCTTTTCTTTTCTTTCTTTTTCTATTCTGCTT
TTCCTCTTTTTCCTTTCATCTCCCCTTCCATTTCCCCTCCTCCATCTCTT
TTTCTTTCTTCCTCCCCTATTATCCCTCTTCTCTTCCATCCCTCGTGTCT
CCTCCACCTTCTTATTCCTTCTACCCCCTGTCCTTTTCTCCTCCTCCCCC
TCG
CGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCAAATAGAANACCAGAACTGGTACA
ATCTGGAGACCCACTTACTGGTCATTGCTTTGCCCATGCCTCTTTCTACT
TCAGGAGCTCCTTGGCAATTTGGATGGAGAATTCTCCCTCACCCACCTGT
CTTCCTCCACTCACCGTCCTCTTTATATGCATCCTTAGTTAGGAAAGAAG
TTTGCTGCTCTCATTAGGTGGACCTGGGGCTTCCTGCAGCCACTCATTGC
TTCAACCTCTTCTCTGTTTTGTGGATCCTGTTTTTGACTGTGGCTGTGTC
TTCCGCTTTCCTCATCAAAGCCCTCAGGCCTTTGGATGGTTTGGCTAAAA
GTTGTTACAACTCAAGAGAAGCTCGGAGGAGTTGACAGATGCTGTGAGGT
TAACTCTGGAATCATTCAGGTCCAGGTGTACCTCAGAGAGCAGTGTTGGC
TGCGTCTGACCACGTGGAGTCGTCTGGACCTGCTGGAGCCTGCTTAGCCG
CATGTGTTGTGTTTGTCCTACTTCTTGTGATCCTGCTCTGAGTGTTGCAA
GCGATAAGCAGCTTTCTTCTTACTCCCTATACTTGCACATGCCCCCTATC
TTATATATTTGGACATGCCCCCCTAATACCTGGTTTCTTACTGAAAACCA
ATAGTTGGTGACTTTTTTTTACACTTCTCTGATACTGCAACCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no411_h14.g1 MSMg01no411_h14.g1 CHROMAT_FILE:
MSMg01no411_h14.g1 PHD_FILE: MSMg01no411_h14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:32 2005
         (474 letters)



>mm_chr8_4015446_4016319
          Length = 874

 Score =  886 bits (458), Expect = 0.0
 Identities = 469/473 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccaaatagaanaccagaactggtacaatctggagacccacttactggtcattgctttgcc 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 ccaaatagaaaaccagaactggtacaatctggagacccacttactggtcattgctttgcc 614

                                                                       
Query: 61  catgcctctttctacttcaggagctccttggcaatttggatggagaattctccctcaccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 catgcctctttctacttcaggagctccttggcaatttggatggagaattctccctcaccc 554

                                                                       
Query: 121 acctgtcttcctccactcaccgtcctctttatatgcatccttagttaggaaagaagtttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 acctgtcttcctccactcaccgtcctctttatatgcatccttagttaggaaagaagtttg 494

                                                                       
Query: 181 ctgctctcattaggtggacctggggcttcctgcagccactcattgcttcaacctcttctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 ctgctctcattaggtggacctggggcttcctgcagccactcattgcttcaacctcttctc 434

                                                                       
Query: 241 tgttttgtggatcctgtttttgactgtggctgtgtcttccgctttcctcatcaaagccct 300
           || |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgctgggtggatcctgtttttgactgtggctgtgtcttccgctttcctcatcaaagccct 374

                                                                       
Query: 301 caggcctttggatggtttggctaaaagttgttacaactcaagagaagctcggaggagttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 caggcctttggatggtttggctaaaagttgttacaactcaagagaagctcggaggagttg 314

                                                                       
Query: 361 acagatgctgtgaggttaactctggaatcattcaggtccaggtgtacctcagagagcagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 acagatgctgtgaggttaactctggaatcattcaggtccaggtgtacctcagagagcagt 254

                                                                
Query: 421 gttggctgcgtctgaccacgtggagtcgtctggacctgctggagcctgcttag 473
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 gttggctgcgtctgaccacgtggagtcgtctggacctgctggagcctgcttag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space:   400896
Effective search space used:   400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)