BAC Information

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BAC

Clone NameMSMg01-411M07
Chromosome8 (Build37)
Map Location 53,025,359 - 53,025,795
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667517, LOC623872
Downstream geneLOC100040220, LOC623935, 1190028D05Rik, LOC676688
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-411M07.T7 (MSMg01no411_m07.b1)MSMg01-411M07.TJ (MSMg01no411_m07.g1)
ACCAG508701AG508702
length750745
length of high quality
(start - end)
634 (76 - 709)437 (81 - 517)
definitionCHROMAT_FILE: MSMg01no411_m07.b1 PHD_FILE: MSMg01no411_m07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:56 2005CHROMAT_FILE: MSMg01no411_m07.g1 PHD_FILE: MSMg01no411_m07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAAATTAGTACTCATGTCAGCNXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTGAATTTCCATGTTCCAAATGCAAGGGCAGCCACATTCATCT
AAGAACCTTTAGTAAAGCTCAAAGCACATATTGTACCTCACACAATAATA
ATGGGAGACTTCAATATACCACTTTCATTAAAGGACAGATCTTGGAAACA
GAAACTAAACAGGGACACGGTGAAATTAACAGAAGTTATGAAACAAATAG
TTTTAACAGATACTACGGAACAGTTTATCCTAAAACAAAAGCATATACCT
TCTTCTCAGCAACTCATGGTATCGTCTCCAAAATTGACCATATAACTGGC
CACAAAACAGGCCTCAACAGATACAAAAATATTGAAATTGTCCTATGCAT
CCTATCAGATCACAGTGGACTAAGGCTGATCTTCAATAATAACATAAATA
ATAGAAATCCAAAATTCACATGGAAACTGAAAAACACTCTTCTCACTGAT
ACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTAGAGTTT
AATGAAAATGAAGCCACAACATACCCAAACTCATGGGATGTAATGAAAGC
ATTTCCAAGAGGAAAACACATAGCTCTGAGTGCCTCCAAAAAGAAACAAG
AGAGAGCATGCACTAGCAGCTTGACAACATGCCTAAAAGCTCTAGAAAAA
AATGAAGCATATTCACTCAAGAGGATAGATGGCAGGAAATAATCCAACTC

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACATTGTTATGACCTCTCT
GAACTTTACCTCCTGAGATGCTTTTTCTATACAGTAACATTGGTAACCTG
TACTACCACATATGCATTTAAGGATATGTAATTCAGTGCATAACAAATGT
TTTCATCACAGTATCACAGTCAAATTCTATCCAATGATTGTAGAAAATTA
TTTCATTTAATAGTGACTTTACTTGATACTAATATTACCTCCTAAGCATT
CATACTTTTATTACTTTATTATATACCTTCATACTGGTCTTAATGTCTCA
AAGCCTTAATCTAGCTAGAAACATGTGTGACTATACATATGCATAGTAAT
TCTGAGGACATAACTAGATATGAATAGTGACAACAATGTCGAAACAAAAT
AGCAAAATCCTGCCTTCAGCTTTGGTGATGTCTTGATTTTTAAATAACAG
CATTTAAAAACCTTGAGGCAACAGAATGCATGAACATAAAGGCAGCTCTG
AGATCAAACAGAAGATCTTGAGCAACTAAAAAAAGGAATAAACTACTTAT
AGTTCAAACTGATCCCAAGTGAATATGCTGCCGTTATCTGTGCTGAGTGA
TGCCTGGAGCTGCCACTCTAGAATCAGATAGATATGTCCCGGGTATGAGT
AAGAGGAATAGAAACCCTAAGAATCCCATATCTTGTGAACAGATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no411_m07.g1 MSMg01no411_m07.g1 CHROMAT_FILE:
MSMg01no411_m07.g1 PHD_FILE: MSMg01no411_m07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:56 2005
         (437 letters)



>mm_chr8_53025159_53025995
          Length = 837

 Score =  822 bits (425), Expect = 0.0
 Identities = 434/437 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacattgttatgacctctctgaactttacctcctgagatgctttttctatacagtaacat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 637 cacattgttatgacctctctgaactttacctcctgagatgctttttctatacagtcacat 578

                                                                       
Query: 61  tggtaacctgtactaccacatatgcatttaaggatatgtaattcagtgcataacaaatgt 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 577 tggtaacctgtactaccacatatgcatttaaggatatgtaattcagtggataacaaatgt 518

                                                                       
Query: 121 tttcatcacagtatcacagtcaaattctatccaatgattgtagaaaattatttcatttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 tttcatcacagtatcacagtcaaattctatccaatgattgtagaaaattatttcatttaa 458

                                                                       
Query: 181 tagtgactttacttgatactaatattacctcctaagcattcatacttttattactttatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 tagtgactttacttgatactaatattacctcctaagcattcatacttttattactttatt 398

                                                                       
Query: 241 atataccttcatactggtcttaatgtctcaaagccttaatctagctagaaacatgtgtga 300
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 atataccttcatactggacttaatgtctcaaagccttaatctagctagaaacatgtgtga 338

                                                                       
Query: 301 ctatacatatgcatagtaattctgaggacataactagatatgaatagtgacaacaatgtc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ctatacatatgcatagtaattctgaggacataactagatatgaatagtgacaacaatgtc 278

                                                                       
Query: 361 gaaacaaaatagcaaaatcctgccttcagctttggtgatgtcttgatttttaaataacag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 gaaacaaaatagcaaaatcctgccttcagctttggtgatgtcttgatttttaaataacag 218

                            
Query: 421 catttaaaaaccttgag 437
           |||||||||||||||||
Sbjct: 217 catttaaaaaccttgag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 837
Length adjustment: 9
Effective length of query: 428
Effective length of database: 828
Effective search space:   354384
Effective search space used:   354384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)