BAC Information

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BAC

Clone NameMSMg01-411P01
Chromosome8 (Build37)
Map Location 105,373,158 - 105,373,787
singlet/doubletsinglet
Overlap genenone
Upstream geneCdh11
Downstream geneEG667618, LOC100041368, 1600027J07Rik, LOC100041397
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-411P01.T7 (MSMg01no411_p01.b1)MSMg01-411P01.TJ (MSMg01no411_p01.g1)
ACCAG508832AG508833
length761749
length of high quality
(start - end)
632 (49 - 680)634 (74 - 707)
definitionCHROMAT_FILE: MSMg01no411_p01.b1 PHD_FILE: MSMg01no411_p01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:29:09 2005CHROMAT_FILE: MSMg01no411_p01.g1 PHD_FILE: MSMg01no411_p01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:29:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCACATTTATTACCATGCTTTAGAAAATAAACACAACTAATTTA
ATTCAACTTCTACAATCTTCCAACAAAAACATGTGGCAGATTCTTGAAAT
GTAGAAATCAAGTCCAACATTCCAGGCATACATCTTTTTGTCCTCAGAGA
AAGAAAAAAAAAATGCATCCACAATGGGCCTGAGCTGACTGCTTAATCTT
TCTCTTTCTGAATTCCATAAATGGAATTACATCCTATTTCCAATTTCTGG
TTCACATGGCATTTACAGTTATCTACCATTCCTTAAGATATTGTAGAGTT
TTTCCTTTGTACTAGGCTTTCCAAGAAAATTTCCTGCTTCATATAAATAC
TTAATAGACAGAAATCTTTCCTGGGAAACTGCTAAAGATAACATGATTTT
AGGTTATAAATTAAAAGATTACTAAAATTCACAGACATTCCATGTCTAGG
AATGTTTGTTCATTTGAGACCCCCCTCTCTCCATGTTTATCTTTAATCTC
CCAACCAGCTGTCTCCCATAAAAAGATATTTCTGTTTTTAGTTACAAATC
TGTTGTAAGATAAAACTCACTCATAAACACACAACTGCATGCAGACTTTT
TTTTTCTGCTGACCTTATAGAAGTATATCCAGATGANNAATATTAAGTTT
GTTTAGAAATAGAAACTGCATTCTTCTGGTCCTGATGGAGACCCTATGTT
CATAAATTTTC
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAG
AAACACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAAT
CAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCA
AAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATC
CGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAG
CAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGATAAGAAG
GACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAAAAGCCAGAAG
CTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGT
GGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTT
ATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGA
GGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTG
GATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACCATTTCCTA
AACACATGAAACTCTAGAANAATGAAGACTGAAGTGTGAACCCTATCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no411_p01.b1 MSMg01no411_p01.b1 CHROMAT_FILE:
MSMg01no411_p01.b1 PHD_FILE: MSMg01no411_p01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:09 2005
         (632 letters)



>mm_chr8_105372954_105373987
          Length = 1034

 Score = 1149 bits (594), Expect = 0.0
 Identities = 621/630 (98%), Gaps = 2/630 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacatttattaccatgctttagaaaataaacacaactaatttaattcaacttcta 64
           |||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacatttaagagcatgctttagaaaataaacacaactaatttaattcaacttcta 264

                                                                       
Query: 65  caatcttccaacaaaaacatgtggcagattcttgaaatgtagaaatcaagtccaacattc 124
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caatcttccaacaaaaacaagtggcagattcttgaaatgtagaaatcaagtccaacattc 324

                                                                       
Query: 125 caggcatacatctttttgtcctcagagaaagaaaaaaaaaatgcatccacaatgggcctg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caggcatacatctttttgtcctcagagaaagaaaaaaaaaatgcatccacaatgggcctg 384

                                                                       
Query: 185 agctgactgcttaatctttctctttctgaattccataaatggaattacatcctatttcca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agctgactgcttaatctttctctttctgaattccataaatggaattacatcctatttcca 444

                                                                       
Query: 245 atttctggttcacatggcatttacagttatctaccattccttaagatattgtagagtttt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atttctggttcacatggcatttacagttatctaccattccttaagatattgtagagtttt 504

                                                                       
Query: 305 tcctttgtactaggctttccaagaaaatttcctgcttcatataaatacttaatagacaga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcctttgtactaggctttccaagaaaatttcctgcttcatataaatacttaatagacaga 564

                                                                       
Query: 365 aatctttcctgggaaactgctaaagataacatgattttaggttataaattaaaagattac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aatctttcctgggaaactgctaaagataacatgattttaggttataaattaaaagattac 624

                                                                       
Query: 425 taaaattcacagacattccatgtctaggaatgtttgttcatttgagacccccctctctcc 484
           |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 625 taaaattcacagacattctatgtctaggaatgtttgttaatttgagacccccctctctcc 684

                                                                       
Query: 485 atgtttatctttaatctcccaaccagctgtctcccataaaaagatatttctgtttttagt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atgtttatctttaatctcccaaccagctgtctcccataaaaagatatttctgtttttagt 744

                                                                       
Query: 545 tacaaatctgttgtaa-gataaaactcactcataaacacacaactgcatgcagacttttt 603
           |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tacaaatctgttataaagataaaactcactcataaacacacaactgcatgcagacttttt 804

                                         
Query: 604 tttt-ctgctgaccttatagaagtatatcc 632
           |||| |||||||||||||||||||||||||
Sbjct: 805 tttttctgctgaccttatagaagtatatcc 834


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1034
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1024
Effective search space:   636928
Effective search space used:   636928
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)