BAC Information

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BAC

Clone NameMSMg01-412G03
Chromosome8 (Build37)
Map Location 58,076,640 - 58,077,010
singlet/doubletsinglet
Overlap genenone
Upstream geneGm392, LOC100040212, Gm1153, EG664808, EG664818, EG664834, EG664859, EG664876, LOC100040356
Downstream geneLOC664916, Adam29, Glra3, LOC664812, Hpgd, LOC664948, BC088983, Fbxo8, LOC100040431
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-412G03.T7 (MSMg01no412_g03.b1)MSMg01-412G03.TJ (MSMg01no412_g03.g1)
ACCAG509169AG509170
length747750
length of high quality
(start - end)
543 (49 - 591)406 (78 - 483)
definitionCHROMAT_FILE: MSMg01no412_g03.b1 PHD_FILE: MSMg01no412_g03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:29:43 2005CHROMAT_FILE: MSMg01no412_g03.g1 PHD_FILE: MSMg01no412_g03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:29:43 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
GAGTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCC
GCGGAATTCAAGAGAATTACACTTAATAATATACCTAATAATATACTTAA
TAATGGAATGATAAATGCTCTGTTTCCATGACAATCACATGAACTAGAAT
TTTTTCATGATTTCTATATTTGTAAAACACAAACGTAAAGCAGTAACACA
GCAGCATCTCTGCAGGTGAATAATCATGTTTTATTCACACTGTATTGAAT
TTTACTTTAGCAAATATGACACATTTGATTGTTACAAATCTGGTCATGAC
AGATGGCTGAAATGGGCTAAAATATTGTGCTAGGCCAGCAAAATGAATTA
GGAAACAAGTATCCAAGTAAAAAAAATTACTTATATTTATACATAATGCA
GTATATGTAGAAAAAAAGAAACATGTAACATATTCATAGCCTTTATTAAG
TTATATTAGTGTATAAATATGTACAATGTATATAAAATAAGGCATATCTG
TAAATAGATTGGAAACTACCTTAATTTGATATGGTGTATGATCTATTATT
GGCATGTACTACAGTGATGTATAAATCTTTTGTGGAAGAACAGATTGGTA
TCTATGGGTTTTTTTTTTGTCTTGTTGCCCCTTTAATTCTTTCTCCACTT
CAATATATAATACATTTTTTACCGACACATTCCATAATATTATTGAACTA
TCTATTTCCTCTCAAATGCAATTTTCCCTTTTTGACCTCCACGTTTG
NCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATGCAGTTGAATCCTTCTTAACA
GTCTGCTTTACGGGAACCTTTATTACCGCGACCCGCAGTTCTGGTTCTGG
AATGAGGGATCTTCCTTGCGCCGGTGAAACTCCCGTCCCGAGTTTCCTCC
CGGGTTTTTTCTTCCCGGATTTTTTCTCGTCCCGGAATTTCTTGTCCCGG
GTTTCGGCACCAATTCTTAATAGCGTTCTCACGCCCGGCCAGGAAGAAAC
AACAGACCAGAATCTTCTGCGGCAAAACTTTATTGCTTACATCTTCAGGA
GCTAGGAGCGCAAACCCCCAGCCCCAAAAGCGAAAGCCCCTTCAATTCTT
ACATCTTTAGGAGCCAGAGCTCCGGCGCGCCAAAGCGCAGAGCGCGCTCT
ATTGTTTACATCTTTTGGCAGCGAGAGAGCGCAGGGCGTGCATAGCCAGA
GAGATGCCAGCGAGAGAGAAAGGGGGAAACCCCGTCCCCTTTTTTAGAGA
GTATATTTCGCCTATGAAGCACTCTTCCTTGATGTGTGGACTCGCCGTCG
ATTTGACGTTACTCAAAGCGCGAAAACTCCATTCCCATAATATTCCTGGT
TCTGGGCCAAATATATTTTTTTACCTTAACTACATATGTGTATTTTTCTT
CCTTCGTTTCCTTGCCTGTCCTCTCCTTATTTCTTCTTCTTCTCATATCN

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no412_g03.b1 MSMg01no412_g03.b1 CHROMAT_FILE:
MSMg01no412_g03.b1 PHD_FILE: MSMg01no412_g03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:43 2005
         (543 letters)



>mm_chr8_58076067_58077010
          Length = 944

 Score =  441 bits (228), Expect = e-128
 Identities = 337/376 (89%), Gaps = 9/376 (2%)
 Strand = Plus / Minus

                                                                       
Query: 172 ataatcatgttttattcacactgtattgaattttactttagcaaatatgacacatttgat 231
           |||||||||||||||| ||| || |||| ||||||||| ||||||||||||||||||| |
Sbjct: 944 ataatcatgttttatttacaatgcattggattttacttcagcaaatatgacacatttggt 885

                                                                       
Query: 232 tgttacaaatctggtcatgacagatggctgaaatgggctaaaatattgtgctaggccagc 291
           | | |||||| |||| |||||||||| | ||| ||||||| |||||||||| || |||||
Sbjct: 884 tctgacaaatttggttatgacagatgaccgaagtgggctacaatattgtgccagcccagc 825

                                                                       
Query: 292 aaaatgaattaggaaacaagtatccaagtaaaaaaaatt---acttatatttatacataa 348
           |||||| |||||||||||||||||||||| || | ||||   |  |||||||||||||||
Sbjct: 824 aaaatggattaggaaacaagtatccaagt-aacacaattgcca--tatatttatacataa 768

                                                                       
Query: 349 tgcagtatatgtagaaaaaaagaaacatgtaacatattcatagcctttattaagttatat 408
           ||||||||||||  | ||||| || ||||||||||||||||| |||||| ||||||||||
Sbjct: 767 tgcagtatatgt--ataaaaataatcatgtaacatattcataccctttagtaagttatat 710

                                                                       
Query: 409 tagtgtataaatatgtacaatgtatataaaataaggcatatctgtaaatagatt-ggaaa 467
           ||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 709 tagtgtacaaatatgtaaaatgtatataaaataaggcatatctgtaaatagatttggaaa 650

                                                                       
Query: 468 ctaccttaatttgatatggtgtatgatctattattggcatgtactacagtgatgtataaa 527
           |||||||||||||||||||| ||||||||||||||| |||||||| ||||||| ||||||
Sbjct: 649 ctaccttaatttgatatggtatatgatctattattgtcatgtactccagtgatatataaa 590

                           
Query: 528 tcttttgtggaagaac 543
           ||||||||||||||||
Sbjct: 589 tcttttgtggaagaac 574


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 944
Length adjustment: 10
Effective length of query: 533
Effective length of database: 934
Effective search space:   497822
Effective search space used:   497822
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)