NGGGATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAAAAGCCTGCCTATGGCTATAGGTTGAATACTAACTAGGTG
ACTGAGGGTGTTCCTGGGCAACCAACAACCTTCAATCTGATGCTAAAAAA
GAGAGGCACAACATGCTAAGAAAAAATATATAATTGTGTGGATCTGAGAG
GAAGAGGCATGCGTAACAAAGAATTAGCAAAGAAGTAAATAACCTTGATT
TCTTGCAACGCTGTATCAGCATTCTGGCACTTAGGAGATGGGTTATGGAA
ATGCTTATTGAGCACAGATGTTATCTTTCTGCTTTCTTCACAACCTGAGT
GCACGCTATGTAAAATTATCAAATTGTGATTGCAGAAGCAATTTTAACAG
ATGCATATCCATGTGGATAAATCATTGCAAAAATATTAGATCCTTTAAAA
TAATTCTTTTTATGTATGTTTCTTTTTGGTTTATTGATTGGTTTTGGAAA
AAAAAAACTTCCAAGAAAATTATTCTGAAATAATTCAAGCTAGTATTAAC
TCTACTTTTCAGTTGCAGTATATAAAAGTAGTGAATTTTATGATTAGATC
AAATATCCNACATGTTTGGTAAAACCAATATTTACCGACTAAACCGAGTC
CATATAAGATCAGAACTTTCAAAAGAGAAACGGGATGGGGAAATGTTTTG
CCCTTCCATCAGGATGGATTGCTTCCTGCAAAAGCTGTTTTGCTGN

NNCCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGCTAATACCATCTGGCTC
TGGGCTTTTTTAATGGGTTGGGGTTGAGAGAATATAATGTCTATTTCTAG
TTTCCTTAAGATTTATAGGACTAATCAGATAGTTTACCTGATTTTGATAT
AACTTTGCTCTTACTGTGGAGTTGCTATCCCCTTCAGTGCCCACAATCCT
TCCTCCTAATCTTTCATAAGAGTTCCAATCTCTATGAACTCTTTGGCTGT
GTGTGTGTGTGTGTGTGTGCACACTTGTGGGTGTGTTTACCTTTTGTTTG
TTTTGCTGGTGTGGAATTATTTGTTACTTGTGTTTTCTTTGGTGTAGTGA
AACTTCTTTGGTTGGAATTTTTCTTCAAGAAACTTCTGTAGAAATGGATT
TGTGAATAGACATTGTTTAAATTTGGTTTTGTCATGGAGTACAGGTGACA
GGGTGAAGTTCAGGGTTGTACGGGGTGGTTTACAGGGACCTGTTGGACCA
CCCCGCCAAAATTCTTACCCCGCCCTTTATCTCTTTGTAATCCCCGACCA
TGTATCCCGTTTTTGAATCTTTTCTTTCCCTCTTTTTCCCGTATTTTTTT
TCCCCCTTTTTTCTCTTTTTTTTTGATTGTTCCCTTCCCTTTTTATTGTA
TACATTCCCTACCCCCCATTCCCTTCCTGCACCCTTCTCCCCCATCTTCT
ACCCTTCCCCTCTTTCGCCGTTCG

Query= MSMg01no412_h06.b1 MSMg01no412_h06.b1 CHROMAT_FILE:
MSMg01no412_h06.b1 PHD_FILE: MSMg01no412_h06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:49 2005
         (512 letters)



>mm_chr8_6843036_6843949
          Length = 914

 Score =  944 bits (488), Expect = 0.0
 Identities = 504/510 (98%), Gaps = 2/510 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaaagcctgcctatggctataggttgaatactaactaggtgactgagggtgttc 64
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaaagcctgtttatggctataggttgaatactaactaggtgactgagggtgttc 264

                                                                       
Query: 65  ctgggcaaccaacaaccttcaatctgatgctaaaaaagagaggcacaacatgctaagaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctgggcaaccaacaaccttcaatctgatgctaaaaaagagaggcacaacatgctaagaaa 324

                                                                       
Query: 125 aaatatataattgtgtggatctgagaggaagaggcatgcgtaacaaagaattagcaaaga 184
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 325 aaatatataattgtgtggatctgaaaggaagaggcatgcgtaacaaagaattagcaaaga 384

                                                                       
Query: 185 agtaaataaccttgatttcttgcaacgctgtatcagcattctggcacttaggagatgggt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agtaaataaccttgatttcttgcaacgctgtatcagcattctggcacttaggagatgggt 444

                                                                       
Query: 245 tatggaaatgcttattgagcacagatgttatctttctgctttcttcacaacctgagtgca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tatggaaatgcttattgagcacagatgttatctttctgctttcttcacaacctgagtgca 504

                                                                       
Query: 305 cgctatgtaaaattatcaaattgtgattgcagaagcaattttaacagatgcatatccatg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cgctatgtaaaattatcaaattgtgattgcagaagcaattttaacagatgcatatccatg 564

                                                                       
Query: 365 tggataaatcattgcaaaaatattagatcctttaaaataattctttttatgtatgtttct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tggataaatcattgcaaaaatattagatcctttaaaataattctttttatgtatgtttct 624

                                                                       
Query: 425 ttttggtttattgattggttttggaaaaaaaaaa--cttccaagaaaattattctgaaat 482
           ||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||
Sbjct: 625 ttttggtttattgattggttttgaaaaaaaaaaaaacttccaagaaaattattctgaaat 684

                                         
Query: 483 aattcaagctagtattaactctacttttca 512
           ||||||||||||||||||||||||||||||
Sbjct: 685 aattcaagctagtattaactctacttttca 714


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 914
Length adjustment: 10
Effective length of query: 502
Effective length of database: 904
Effective search space:   453808
Effective search space used:   453808
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)