BAC Information

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BAC

Clone NameMSMg01-413B14
Chromosome8 (Build37)
Map Location 87,646,622 - 87,646,937
singlet/doubletsinglet
Overlap geneEG244556
Upstream geneLOC100039920, Podnl1, Cc2d1a, 4930432K21Rik, Nanos3, Zswim4, D8Ertd738e, 2410018C20Rik, Ccdc130, Cacna1a, Ier2, LOC100039975, Btbd14b, Trmt1, LOC100039997, Lyl1, Nfix, Dand5, Gadd45gip1, Rad23a, Calr, LOC546080, Farsa, Syce2, Gcdh, Klf1, Dnase2a, Mast1, Rtbdn, Rnaseh2a, LOC666841, Prdx2, Junb, Hook2, Best2, Asna1, 2310036O22Rik, Tnpo2, Fbxw9, EG436049, Dhps, 1500041N16Rik, BC056474, Man2b1
Downstream geneEG624855, Olfr371, Vps35, Orc6l, D830007F02Rik, 4921524J17Rik, Gpt2, Dnaja2, Neto2, Itfg1, LOC100040798, Phkb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-413B14.T7 (MSMg01no413_b14.b1)MSMg01-413B14.TJ (MSMg01no413_b14.g1)
ACCAG509712AG509713
length738749
length of high quality
(start - end)		460 (209 - 668)316 (253 - 568)
definitionCHROMAT_FILE: MSMg01no413_b14.b1 PHD_FILE: MSMg01no413_b14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:40 2005CHROMAT_FILE: MSMg01no413_b14.g1 PHD_FILE: MSMg01no413_b14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGATTTCACACAC
CCACTCTCATCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACAC
AGTGAAACTAATAGAAGTTATGAAACAAATGGACTTAACAGATATCTACA
GAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCAT
GGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAA
CAGATACAAAAATATTGAAATTGTTCCATGCATCCTATCAGACCACCATG
GACTAAGGCTGATCTTCAATAACAGCATAAATAATGGAAAGCCAACATTC
ATGTGAAAACTGAACAACACTCTTCTCAAGGATACCTTGATCAAGGAAGG
AATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCA
CAACATACCCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAA
CTCATAGCTCTGAGTGCCTCCAAAAAGAAACTAGAGAGAGCACACACTAG
CAGCTTGACAACACATCTAAATGCTCTAGAAAAAAAGGAAGAAAATTCAC
CCAAGAGGAGTAGATGGCAGGAAATAATCAAACTCAGGAGTGAAATCAAC
CAAGTGGAAACAAGAACAACAATTCAAAGAATTAACCAAACGAGGAGTTG
GTTCTTTGAGAAAATCAAGATAGATAAACCCTTAGCTN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCAAGGACTGGTCGATTTTTCAATAAGTTGACCATTTAG
CTGTGCCTGTACCAGCTTTTCTAGTGCCTGTAATTTTTATGATATCAAAG
GCCACTGTTCTACTCATACAGGCTTGTCAGCTAACCATTTTAAAGGTAGG
GTGGTTGGTACCTTCGAAAGGCCAACAXXXXXXXXXXXXXXXXXXXXXXX
XXTCTGAATGGTCTTAACAGAACAGAGCAAATGTTCTTGTACCAGCCATG
GATGTGACACTCATGTGCCTCCTGTGGGAAGAGACGGTAGAAGCTGGTGA
CCTAGAAATTTGTGCTGATGAATTTCCTGGATCCTCAGCCACCTACTGAA
TACTTGAGGTTGGTTGTGGCGTAGGAAACACAGTCTTTCCAATTTTACAA
ACTGACAAGGAAGCATGTTGTCAGGTTTACAGGACAGCAAAGAGAAAAGG
TGAGTTTGTCCCTGTCAGCATGACTTATTTGGGGTTTAGATATCCATTTA
GGAGTGGCTTTAATGTTAGAGAAATTAGTTAATACCAGTTACCTTCTCTG
AAGTGCCTAAAAGATCTTCATGTTCTGTTTCTCTTGTGAGCTCTGTGATG
ATCTTGTTATGGTGGAAAGTGGAAATTTAANGGTTTGGAGAGACAGTTGT
GTTGGATTGTGTTTTTGCGGGNCAAAAACTCTGATAAAGGGTTTCCTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no413_b14.g1 MSMg01no413_b14.g1 CHROMAT_FILE:
MSMg01no413_b14.g1 PHD_FILE: MSMg01no413_b14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:40 2005
         (316 letters)



>mm_chr8_87646422_87647137
          Length = 716

 Score =  603 bits (312), Expect = e-177
 Identities = 315/316 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgaatggtcttaacagaacagagcaaatgttcttgtaccagccatggatgtgacactc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgaatggtcttaacagaacagagcaaatgttcttgtaccagccatggatgtgacactc 260

                                                                       
Query: 61  atgtgcctcctgtgggaagagacggtagaagctggtgacctagaaatttgtgctgatgaa 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggtgcctcctgtgggaagagacggtagaagctggtgacctagaaatttgtgctgatgaa 320

                                                                       
Query: 121 tttcctggatcctcagccacctactgaatacttgaggttggttgtggcgtaggaaacaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttcctggatcctcagccacctactgaatacttgaggttggttgtggcgtaggaaacaca 380

                                                                       
Query: 181 gtctttccaattttacaaactgacaaggaagcatgttgtcaggtttacaggacagcaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtctttccaattttacaaactgacaaggaagcatgttgtcaggtttacaggacagcaaag 440

                                                                       
Query: 241 agaaaaggtgagtttgtccctgtcagcatgacttatttggggtttagatatccatttagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaaaaggtgagtttgtccctgtcagcatgacttatttggggtttagatatccatttagg 500

                           
Query: 301 agtggctttaatgtta 316
           ||||||||||||||||
Sbjct: 501 agtggctttaatgtta 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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