Query= MSMg01no413_c18.b1 MSMg01no413_c18.b1 CHROMAT_FILE:
MSMg01no413_c18.b1 PHD_FILE: MSMg01no413_c18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:46 2005
(589 letters)
>mm_chr8_40435259_40436247
Length = 989
Score = 1087 bits (562), Expect = 0.0
Identities = 583/590 (98%), Gaps = 2/590 (0%)
Strand = Plus / Plus
Query: 1 cacaaatttttgttgttgttggttttttttttttgagaca-tgtttctctatgtagccct 59
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 201 cacaaatttttgttgttgttggttttttttttt-gagacaatgtttctctatgtagccct 259
Query: 60 ggctgtcatggaactcactctgtagaccaggctggcctgtctcagaaattcacctgcctc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ggctgtcatggaactcactctgtagaccaggctggcctgtctcagaaattcacctgcctc 319
Query: 120 tccctcccaagtgctgtgattaaaggtgtatgcaaccactgcccggctagaaaaaggttt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tccctcccaagtgctgtgattaaaggtgtatgcaaccactgcccggctagaaaaaggttt 379
Query: 180 aaaaagtgtttgcaaaggacattttgcaaaaccaagtttatctatccattggtcattatc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aaaaagtgtttgcaaaggacattttgcaaaaccaagtttatctatccattggtcattatc 439
Query: 240 tgtattagtttcctttttgggaagttaacaacgctttgttcaataaaaagcaaataacat 299
||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tgtattaatttccatgcagggaagttaacaacgctttgttcaataaaaagcaaataacat 499
Query: 300 gctttttaaagagtcacattagctgcaatataaaataaaacacaatgaaagttgacccaa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gctttttaaagagtcacattagctgcaatataaaataaaacacaatgaaagttgacccaa 559
Query: 360 ctatttactgtccacaaggaaaaaaaaagagagagagctaggaatatatatacatacata 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ctatttactgtccacaaggaaaaaaaaagagagagagctaggaatatatatacatacata 619
Query: 420 tgcacaaacctagagtccaaagctgaaaatcaaagtagcaagcaaacaggtgcttcaaac 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tgcacaaacctagagtccaaagctgaaaatcaaagtagcaagcaaacaggtgcttcaaac 679
Query: 480 aaactggaatagcaattatttttacttataaactggactccagacaagaacaatcagaag 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aaactggaatagcaattatttttacttataaactggactccagacaagaacaatcagaag 739
Query: 540 agatgaagagcaggagttcatattggtaaaaagaacaagtcattaagggg 589
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 agatgaagagcaggagttcatattggtaaaaagaacaagtcattaagggg 789
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space: 566841
Effective search space used: 566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no413_c18.g1 MSMg01no413_c18.g1 CHROMAT_FILE:
MSMg01no413_c18.g1 PHD_FILE: MSMg01no413_c18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:46 2005
(473 letters)
>mm_chr8_40619026_40619898
Length = 873
Score = 891 bits (461), Expect = 0.0
Identities = 470/473 (99%)
Strand = Plus / Minus
Query: 1 catctgtggattgcattaagcagaaagatgtcatgatatggtagttagcctgaagacagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 catctgtggattgcattaagcagaaagatgtcatgatatggtagttagcctgaagacagg 614
Query: 61 ttttcctttacatcctcatattcctagtgcctgatacagtaagccctcaaagaggtgata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ttttcctttacatcctcatattcctagtgcctgatacagtaagccctcaaagaggtgata 554
Query: 121 aatttataaacttatatccagataatgatcaggaataaatctttcatttgtgtgcaatct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 aatttataaacttatatccagataatgatcaggaataaatctttcatttgtgtgcaatct 494
Query: 181 cttatgaattacagggttatgcacctacatttccacacacctcagtctattctctcatct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 cttatgaattacagggttatgcacctacatttccacacacctcagtctattctctcatct 434
Query: 241 atgaagtcatttaagtaagagattctgctgttcttgcacttagattctgatatacctgtg 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 atgaagtcagcaaagtaagagattctgctgttcttgcacttagattctgatatacctgtg 374
Query: 301 agataacagctgtgataaccctctagaacctagacacatgacaaagaaaagagagttaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 agataacagctgtgataaccctctagaacctagacacatgacaaagaaaagagagttaca 314
Query: 361 tagtacttttcccccctggattatgcttattctttgtgttcttctggtcatagttgttct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tagtacttttcccccctggattatgcttattctttgtgttcttctggtcatagttgttct 254
Query: 421 cttaacccagagaccacagccagccaaattgcataaacagcactcatctgttc 473
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 cttaacccagagaccacagccagccaaattgcataaacagcactcatctgttc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space: 399569
Effective search space used: 399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
