BAC Information

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BAC

Clone NameMSMg01-413M15
Chromosome8 (Build37)
Map Location 102,559,345 - 102,559,701
singlet/doubletsinglet
Overlap genenone
Upstream geneCdh8, A330008L17Rik, LOC667531, LOC100042069
Downstream geneLOC436054, LOC100042078, LOC100042086, LOC100042092, LOC384895
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-413M15.T7 (MSMg01no413_m15.b1)MSMg01-413M15.TJ (MSMg01no413_m15.g1)
ACCAG510239AG510240
length737737
length of high quality
(start - end)		619 (34 - 652)522 (61 - 582)
definitionCHROMAT_FILE: MSMg01no413_m15.b1 PHD_FILE: MSMg01no413_m15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:31:35 2005CHROMAT_FILE: MSMg01no413_m15.g1 PHD_FILE: MSMg01no413_m15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:31:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACATTTG
TACCAGCTTTAGCTCAAACTATTGACAAAACAAAGTAAAGTGGAAATTTA
AGAGAAAAAAGGGGCAAGAATGTAGTAGTACAGGCAGAAACTTAAGATAG
ATATTGTTTCCTCAATACCAGATTTTCCCTCAAAATTCTTGTAATGATTA
ATTTTAATTATCAACTTGATGAGATCAAAAGTCATATAGGGGAAAGTCCT
CTGGTAATAGCCAAAGGGAATTGTCTTGATTGGGTTCATTAAGTTGGGAA
GACACTCCCACTATGGGCAGCATAACTCCCTATGCTGCCCACATAAAAAG
GAAAAGCATGAGCTAAATATAAGTGTTCATTTCTTTCTACTTCCTGATTA
TGGAGGGATGGTGACGAACTACTTCATGCTTCCACCATCATGCCTTTCCT
ACCACGATGGAATTTACCTTTGAATTGTGAAGTTAAATAAAGCCTTTCTA
TCCTATATTGTACTTGTCAGGGTATTTTATCATGACTACAGGGAAATTTT
CAATCACTGGAGTCCTGCTTTCTCTGAATATATATCTACATGTTGTTTAA
TATTGACTTTTGGAGGTAGAATTAGCTTCATTTACATATTAATCAATCCA
GTTGTGATGGACCACCCTAATTACCTCACATTTAGAATATAAATTTCAAT
GATTAGCATTCTGAACTAATGATTTATTTGAACCGCN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTCAGTTTAGATCTATACATCCATATTTTGATTGGGTTGCT
TGGTTTTTGGTGGTTAGCTTCTTGAGTTCTTTATATATTTTAGATATTAG
CCCTCTCTCGGATGTGGGGTTAGTGATAAATGTTGCAAATTTGTCTTATT
GACTATGTACTTTGCATTACAGGAGCTTTCATGAATTCCTATTTATCAAT
TCTTGATCTTAGGGCATGAGCCATTGTTGTTCTGTTTAGGAAATTTCCCA
ATGTGTCTTTGAATTCAAGGCTCTTTTCCACTTTCTCTTCTATTAGATTC
AGTGCATCTGGTTTCATGTTAAGGTCCTTGATTCTCTTTGACTTGAGCTT
TGTTCAACGTGACAAATATGCCTTTATTTTCATCTTTCTACATACAGTCA
CCCAATTAAACCAGCACCATTTTTTGAAGATGTTTTCATTTATCCATTGT
ATATTTTTGGCTTCTTTGTCAAAGGTCAAGTGTCCTTTAAGTGTGTGGTT
TATGTTTGGGTCTTCAATTCTATCCCATTGATCAATGTACCAATACCTTG
CAGTTTTTATCACTATTGTTCTGTAATAAAAGCTTGAGGTCTTGAACAGT
GATTCCTCTGCCCCTCTTTACTGTTAAAAATTTTTTTACTAATCGGTTTT
TTTACCTTTCCACAAGAATTTAGAATTGCCCTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no413_m15.b1 MSMg01no413_m15.b1 CHROMAT_FILE:
MSMg01no413_m15.b1 PHD_FILE: MSMg01no413_m15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:35 2005
         (619 letters)



>mm_chr8_102559345_102560364
          Length = 1020

 Score =  613 bits (317), Expect = e-179
 Identities = 347/357 (97%), Gaps = 1/357 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacatttgtaccagctttagctcaaactattg-acaaaacaaagtaaagtggaaa 63
           ||||||||||||| |  |||||||||||||||||||| | |||||||||| |||||||||
Sbjct: 357 gaattcacatttgaatgagctttagctcaaactattgaaaaaaacaaagtgaagtggaaa 298

                                                                       
Query: 64  tttaagagaaaaaaggggcaagaatgtagtagtacaggcagaaacttaagatagatattg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 tttaagagaaaaaaggggcaagaatgtagtagtacaggcagaaacttaagatagatattg 238

                                                                       
Query: 124 tttcctcaataccagattttccctcaaaattcttgtaatgattaattttaattatcaact 183
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 237 tttcctcaataccagattttccctcaaaattcttgtgatgattaattttaattatcaact 178

                                                                       
Query: 184 tgatgagatcaaaagtcatataggggaaagtcctctggtaatagccaaagggaattgtct 243
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 tgatgagatcaaaagtcacataggggaaagtcctctggtaatagccaaagggaattgtct 118

                                                                       
Query: 244 tgattgggttcattaagttgggaagacactcccactatgggcagcataactccctatgct 303
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 117 tgattgggttcattaagttgggaagactctcccactatgggcagcataactccctatgct 58

                                                                    
Query: 304 gcccacataaaaaggaaaagcatgagctaaatataagtgttcatttctttctacttc 360
           ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57  gcctacataaaaaggaaaagcatgagctaaatataagtgttcatttctttctacttc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1020
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1010
Effective search space:   615090
Effective search space used:   615090
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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