BAC Information

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BAC

Clone NameMSMg01-414O23
Chromosome8 (Build37)
Map Location 32,611,408 - 32,611,879
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC547008, Dusp26, Rnf122, BC019943, Rbm13, Fut10, LOC666330, LOC666568, 7420700N18Rik, LOC100041329
Downstream geneEG330731, LOC100041340, Nrg1, 2010007E15Rik, EG666589, EG546052
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-414O23.T7 (MSMg01no414_o23.b1)MSMg01-414O23.TJ (MSMg01no414_o23.g1)
ACCAG511112AG511113
length1,217767
length of high quality
(start - end)		---472 (82 - 553)
definitionCHROMAT_FILE: MSMg01no414_o23.b1 PHD_FILE: MSMg01no414_o23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:09 2005CHROMAT_FILE: MSMg01no414_o23.g1 PHD_FILE: MSMg01no414_o23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNAAGAAAAATTCTAATAAATTTTTGNCGGGCCCCGCCTTAATACCGA
ACTTCCCACTTATTATNGTTCCAGNAGGNNATCCCGTCGNGNAAATTTCC
CTTANGNCCCCCCTCTCACCGCAANCCCCCTGGGGCCCCCCCTTTTTNTA
GGTTTTTTAACCCCACGNANTACTACACCATTGTGCTTGCGGATTTTGTG
CATNGCNCCACGGCNNAGNNTACCTGTGGGGCGNACGNNTCCNNNNAGGN
CGNNNNAGNACGTNNNTGGNNTGGNNNAGNNNNNTGGNNNTGNTCGNTTN
NCNTCGAAGNNNNNCCNNCCCNNCTGCNCCCNCNGGCCCNNCCCCCCCCC
CNCCCCCCCNCCCCNCCCCCNCNCCCCCCCCCCCCCCCCCNCNNCCCNCC
CCCCNCNNCCNCCCCNNCCCCCCCCCCCCCCCCCCCCCNCCCCNCCTTCC
CCNNCCCNCNCNNNCCCCCCCCCCCCCCCCCNCCCCNCCNCCCNNCCCCC
CCCCCCCCCCCCCCCCCCTCNCCCCCCTCCCNCCCCCNNCCCCCCCCCCC
CCCNCCCCCNCCCCCNCCCNNCCCCCCCCCNCCCCCCCCCCCCCCCTCNC
CCCCCNCCCCCCCCCCCCCCCCNNCCCCNCCCCCNCTTTCCCCCCNCCCN
NNCCCCCCCCCCNNCCCNCCCCCCCCCCCTCCCTCCCTCCCCTTTCTTCT
TCTTCCTTTTCTTCTTCCTCCCTTCCCTTTTCCTTCTCCCCCCCCTTTTC
TCNTCCTCCNCTCTCTTCTTCCTCCTCCCTTCTTCTCCCCTCTTCCCTTT
CTCTTCCTCTTTTTTTCTTTCTCCTTTTCCTTTCTCTTCTTTTTCCTCTC
TCTTCTCTCCNCTTCTCCCTCTCTTCTCTTTTTCTCCCCTCCCTCCCCTC
CCTTTCCTTCTCTCTCCTCCCTTCTTCCTNTTTCTCTCCTTCCCTCTCCT
CTNTTTTTCTCTCCCTCTCTCTCCTTTNTCCTNCCCCTCTCCTCTTCCTT
TTCTCTCTCCTCTCTCCTTTCCTCCTCTCCTCTTTTNTCTTCCTCCTCCT
CCCTCCTTCTTTCNCTTCTCTTCCTCTTCTCTCCTCTTCTCTCCCCTCTT
TTCTTCTTCTTTCTCTCTCTCTCTCCTCTTCTTTCCTCTCTCTCCCTCCT
TCTCTTCCTTTTCCTTTTCTTCTCTCTCTCTTCTTNNCCTCTCTCTTCTT
TTCTTCCNTNTCACTCA

NNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCTTTTCCCTTCAGATA
TAACTCTGGTAGTTTGTCACAATGACAGAAAAGATGGTAAGTACAAGGTG
CTTCTGGGAAATACTCTGCAAAGCACTGCCATAGTAAAACAATTAATCTC
CTGCAAGTGTTCAGTATTCCCTGTGTGTCAAAGGCTTTCGGGGGTAGATG
TCCAGAGGTGCAATGAATCTGTTTACTTTCTTTAAAGTTCCTGTTAAGGC
AATTGCTCCATTGGACTTCCGGTAGTTGAAGTCTTATGGAATTTCTGCAG
GTTTTTGGTTGGAGTCATTTTTATGAAGATGAAAGTTTATTACAGATCTA
TTTTTAGTATTTCCCTTCATCATTCTTATTTTAGGACAAAATGGCAGAAA
ATCTAAAAGTTAGCATATACAAAGTCATAGTCCTAGGTTACCAAGTAGCA
GAGTTAAGAATAGAANACAGAAGCCGGGCATGGTGGCGCACGCCTTTAAT
CCCAGCACTCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCAAGNCAGCC
TGGTCTACAAGTGAGCTCCAGACAGCCAGAGCTATAAAGAGAAAACCTGT
CTCGAAAAAAAAAAAGAATAAAAACNGGACTCTTTGCGCTCGGAAGGAAG
AAATTTTCCCCACTTGTTTTGGGCCCAGGGGGAAGCTTAATTCCCGCCCC
AAAAAAAATTGGGGGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no414_o23.g1 MSMg01no414_o23.g1 CHROMAT_FILE:
MSMg01no414_o23.g1 PHD_FILE: MSMg01no414_o23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:09 2005
         (472 letters)



>mm_chr8_32611240_32612111
          Length = 872

 Score =  907 bits (469), Expect = 0.0
 Identities = 471/472 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttcttttcccttcagatataactctggtagtttgtcacaatgacagaaaagatggtaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 cttcttttcccttcagatataactctggtagtttgtcacaatgacagaaaagatggtaag 581

                                                                       
Query: 61  tacaaggtgcttctgggaaatactctgcaaagcactgccatagtaaaacaattaatctcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 tacaaggtgcttctgggaaatactctgcaaagcactgccatagtaaaacaattaatctcc 521

                                                                       
Query: 121 tgcaagtgttcagtattccctgtgtgtcaaaggctttcgggggtagatgtccagaggtgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 tgcaagtgttcagtattccctgtgtgtcaaaggctttcgggggtagatgtccagaggtgc 461

                                                                       
Query: 181 aatgaatctgtttactttctttaaagttcctgttaaggcaattgctccattggacttccg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 aatgaatctgtttactttctttaaagttcctgttaaggcaattgctccattggacttccg 401

                                                                       
Query: 241 gtagttgaagtcttatggaatttctgcaggtttttggttggagtcatttttatgaagatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 gtagttgaagtcttatggaatttctgcaggtttttggttggagtcatttttatgaagatg 341

                                                                       
Query: 301 aaagtttattacagatctatttttagtatttcccttcatcattcttattttaggacaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 aaagtttattacagatctatttttagtatttcccttcatcattcttattttaggacaaaa 281

                                                                       
Query: 361 tggcagaaaatctaaaagttagcatatacaaagtcatagtcctaggttaccaagtagcag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 tggcagaaaatctaaaagttagcatatacaaagtcatagtcctaggttaccaagtagcag 221

                                                               
Query: 421 agttaagaatagaanacagaagccgggcatggtggcgcacgcctttaatccc 472
           |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 220 agttaagaatagaaaacagaagccgggcatggtggcgcacgcctttaatccc 169


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space:   398244
Effective search space used:   398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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