BAC Information

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BAC

Clone NameMSMg01-416C04
Chromosome8 (Build37)
Map Location 72,355,312 - 72,355,551
singlet/doubletsinglet
Overlap genenone
Upstream geneLpl, LOC100041138, Slc18a1, Atp6v1b2, Lzts1, EG665540, D10627, LOC665553, D130040H23Rik, LOC665561, LOC670593, EG665578, LOC622336, LOC100041482, LOC673968, AI449175, EG636741, 1200003I07Rik, D330038O06Rik, Atp13a1, Gmip, Edg4
Downstream genePbx4, Cilp2, BC028663, Ndufa13, Tssk6, Gatad2a, LOC665649, 9130404D08Rik, Sf4, Tm6sf2, Hapln4, Ncan, Rfxank, 2310073E15Rik, 2310045N01Rik, Mef2b, Tmem161a, Slc25a42, Armc6, Sfrs14, Homer3, Ddx49, Cope, Lass1, Upf1, Comp, Crtc1, Klhl26, Tmem59l, Crlf1, 2810428I15Rik, Uba52, Fkbp8, Ell, Isyna1, Ssbp4, Lrrc25, Gdf15, Pgpep1, Lsm4, Jund1, 2410018E23Rik, LOC100041434, Pde4c, Rab3a, BC051227, Ifi30, Pik3r2, LOC100041971, Mast3, Il12rb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-416C04.T7 (MSMg01no416_c04.b1)MSMg01-416C04.TJ (MSMg01no416_c04.g1)
ACCAG512025AG512026
length1,013735
length of high quality
(start - end)		---240 (56 - 295)
definitionCHROMAT_FILE: MSMg01no416_c04.b1 PHD_FILE: MSMg01no416_c04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:42 2005CHROMAT_FILE: MSMg01no416_c04.g1 PHD_FILE: MSMg01no416_c04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGAAGTAAGAAAAAAATAACNAAGGAANNNNNNNNGATAGNNNNNNNCTC
TAAAAAATGGGGGGGGGCAAAAGACCCCAATAATTGCAGGAGGACGCGGG
GAACCCCAAAGGTTGTATCCCAAAAAGAGGGAAGNCNCAAAACCCCCCCC
CCCGGGGGGGGGGGCGGCGGCGCCTTTTTAACAAAACAAAGGGGGGGGAG
AGAAAAGAAGAAAAACTTATTTTTATATATTGCCAACGGGGCGAAAAAAA
AAAAAAAAAAAACAGGGTAAAAAATAAAAAAAAAAAAACAACCCCCAACA
AAAAAAAAAAAATAAAAAAAAGAAAAACAACCAATTTTTTTCTTTTCCCT
ATTTCTGAAAAAAAGAGAGTGGTATTAAAAAAAAAATTAAAAAAAAACAA
AAAAACACACACACCTTTTTTTGTTTTTTTATAAAAGAAACCAAAAAAAT
AAAAAAAATTTAATTAAACAAAAGAAAGTAGTAAAAATTATTTAAAAAAA
TAAAAACCTAAGTAAGCGAGAGAAATAAAAATAAAATAAAAAAAAAAAAA
AAAAAAAATAAGAATTAAATAAATTAAATTAAAAATATTAGATAGATTAT
AGATTATAAAATAACAAAAAAAATAAAAATAACAATTAAAATATTAAAAA
ACACACAATAATCTAAAAACATAAAAACAAAACAAACAACAATACGATTA
AACAATTAAATAAAAACAAAATATACATAATATAAATAAATATATGCAAA
TTATAACAAAAACATAATAATTTGAAGAAAAAAATTAATATCATGCATCA
AGCTTAACATAAAAAAAAAAATATACATTATAAAAAATAATAAAAAAATT
AAACTACAAACAATTACGGATAAACCTTTAAAAAGAAGAAAAAACAAAAA
AAATCCTCTTAACGCAAACGTGTAAAAAAAAAGCAAGTATCTTTGGCTAT
ATTAAAAAAAAAATAATATACCACCATAAAATAACAAGAATTAATTATGA
AGTAGAATGTATN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTGAGGAGTCATAGAGTGGAGGACCCTGAGGGCTGCTGGGAGAACC
CCAGGGCGGGGGGTGGGAGGGACTGTGAAAAGGACCAGAAATTTTGCGGA
GCCTGGGACTCAGGTGTGAGAGGCCTTGAGGAAGAGGCAGGACTGGGGAG
TGGGAATTCTGAGGAGCTGTGGGCAGCTATGAGGAGGAAGACCCACAGTT
CTGAGGAAGTAGCCAGGGCAGTGAGGAGAGGGGAAGGCACTCTCAGTTAC
CATTGTATTTGATATCAGCTTGAACTATATGAGGCACTGACTCATGACGC
TGAAAATTTAGGGTACTGATATATTTAGGTTGGTAGGTCTTTGTCTGCGC
TGCTTGCTGCCAAGAGATCCATCTCCTCTCTCTTATTATGGGGCCTGTTC
TCCTTCTCGTACCCGCAACTGCTCTTTACTCTTCGTATTCTTTAAGCTTG
CCTACTATTTCTTATCATATTTGCTTTGTTTTATCTTGTTAATAGCTCCG
TCCTGTATAATTTCGATACGTCTTTGTCGCATTGTTTTCTTTTACTGTTT
TTTGTTTTTCTATCGGCGAATGTCGAGTAACGGTNCGTCGTTTTCAGGCC
GCTATTTCTTCTTACTTCTCCTCGTATCTGTCCACCGTTGGGTTTCGCAA
ACGTTAAGGTATGGTTTCGGCTTTACTACATTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no416_c04.g1 MSMg01no416_c04.g1 CHROMAT_FILE:
MSMg01no416_c04.g1 PHD_FILE: MSMg01no416_c04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:42 2005
         (240 letters)



>mm_chr8_72355112_72355751
          Length = 640

 Score =  456 bits (236), Expect = e-133
 Identities = 239/240 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaggagtcatagagtggaggaccctgagggctgctgggagaaccccagggcggggggtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgaggagtcatagagtggaggaccctgagggctgctgggagaaccccagggcggggggtg 260

                                                                       
Query: 61  ggagggactgtgaaaaggaccagaaattttgcggagcctgggactcaggtgtgagaggcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggagggactgtgaaaaggaccagaaattttgcggagcctgggactcaggtgtgagaggcc 320

                                                                       
Query: 121 ttgaggaagaggcaggactggggagtgggaattctgaggagctgtgggcagctatgagga 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 ttgaggaagaggcaggactggggagtgggaattctgaggagctgtggggagctatgagga 380

                                                                       
Query: 181 ggaagacccacagttctgaggaagtagccagggcagtgaggagaggggaaggcactctca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaagacccacagttctgaggaagtagccagggcagtgaggagaggggaaggcactctca 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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