BAC Information

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BAC

Clone NameMSMg01-416K19
Chromosome8 (Build37)
Map Location 84,680,309 - 84,752,118
singlet/doubletdoublet
Overlap geneLOC671182
Upstream geneLOC236010, LOC384852, Inpp4b
Downstream geneIl15, EG666564, LOC675800, EG666289, Zfp330, Rnf150, LOC100039688, Tbc1d9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-416K19.T7 (MSMg01no416_k19.b1)MSMg01-416K19.TJ (MSMg01no416_k19.g1)
ACCAG512435AG512436
length719739
length of high quality
(start - end)		682 (38 - 719)518 (74 - 591)
definitionCHROMAT_FILE: MSMg01no416_k19.b1 PHD_FILE: MSMg01no416_k19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:21 2005CHROMAT_FILE: MSMg01no416_k19.g1 PHD_FILE: MSMg01no416_k19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,680,309 - 84,680,986)(84,751,702 - 84,752,118)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCT
GTTTATATCTGTAATACAATTTTTATTTGGATTATTTGTTTATTTGATGT
CTAGCTTCTTAAGTTCTTTATATACTTTGGATATTATACCTTTATTGGAT
ATGTCGTTGGTACAAAATCTTTTCTCATCCTGTAGGCTGCCACTTTGTCT
AAAGGATGGTGTCCTATGCCATGCAGAAGCTTTTCAGTTTCATGAGGCTC
CATTTATGAATTGTTGATCTTAGAGCCTGTATTATCCATGTTCTGTTCAG
GAAGTCATCTCCTGCACCAGTGTGTTCAAAGTGATTTCCACTTTCCTACT
AGCTCTTCACTCTAAAATCATGCCTATCCCATTGAATTTCTGTGCTATGA
CGACTTCTTACTGAGCTGAATTTCTTTTACAATGAAATCTTGGTCTGTAG
AATGAATTGGGCTAAGTGTATTAGTGAGCAGGAGAGTATTATTCAACAGT
ATTAGAGAAAATTGAATTATACTTCTTACAATACTATAAATCCTCCGGTT
GTAAATTTCAACATAAAAAGTTTATATCACAATATAGTACATAAAATTTT
ACTGGTTTTATGTTGTGTCATGAATTATTTTTTAANATATAATTGGAATC
TATACATTAGCTAACATTTCTAATAGTGAACACTATAATAAGATGACCTT
TCTCCATTTGTTCCTACAG

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGCATGGAAGTTTCCCACCAAACTAAG
AATAGAATTACCAGATGACCCAGCTATACCTCTCCTGAGAGACCCAGGAA
TTCCACATACAACACCGAAATACATGTAAATCCATGCTTATTGTTACCCT
ATTTATTATAGCCTAAAATAGTTAAGGAAAATGTAGTACATGTGCTCAGT
GGGACTTTATTTAGTCATAAAGAAATTAAATTATGACTTTTGTAGGAAGA
ATGGTAGAACGAGAAATTAAGTTAACACAGGCATGGAAAAACAAAATCAT
ATTTTTTCTTATAAGTAGATACTAAATTATAATTTTCATAATCCATCTAT
CTATGTGATGGGCTTAGTTACCTGAAAATAGACATGAAAGAATAAAGAAC
AAGGAGGGAGTAAGACAAATGAGAGAGAAAATAATAAAATGGAATAATAG
GATTGGATTAATTTGTAAACAATTTCCAATAATCCATTTCTCTATTCCCA
CAACAATATAGTACTGGATAAAGAAGCTTCACTCTTTGGTCCAATAGTAA
TTATCACTAANATTTTTAATGCTTTCCTTGGTTCAAATGTGGGATGTANG
TGTTCTCATTATATAATTAAACCCCATCTTGCCATNCTTGGTGTGTCAAA
TACTCCAGTCTAAACCACNGTTTTGAGACCTAGCTTAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no416_k19.b1 MSMg01no416_k19.b1 CHROMAT_FILE:
MSMg01no416_k19.b1 PHD_FILE: MSMg01no416_k19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:21 2005
         (682 letters)



>mm_chr8_84680105_84681186
          Length = 1082

 Score = 1297 bits (671), Expect = 0.0
 Identities = 676/678 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctgtttatatctgtaatacaatttttatttggattatttgtttatttgatgtc 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctgtttagatctgtaatacaatttttatttggattatttgtttatttgatgtc 264

                                                                       
Query: 65  tagcttcttaagttctttatatactttggatattatacctttattggatatgtcgttggt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tagcttcttaagttctttatatactttggatattatacctttattggatatgtcgttggt 324

                                                                       
Query: 125 acaaaatcttttctcatcctgtaggctgccactttgtctaaaggatggtgtcctatgcca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acaaaatcttttctcatcctgtaggctgccactttgtctaaaggatggtgtcctatgcca 384

                                                                       
Query: 185 tgcagaagcttttcagtttcatgaggctccatttatgaattgttgatcttagagcctgta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgcagaagcttttcagtttcatgaggctccatttatgaattgttgatcttagagcctgta 444

                                                                       
Query: 245 ttatccatgttctgttcaggaagtcatctcctgcaccagtgtgttcaaagtgatttccac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttatccatgttctgttcaggaagtcatctcctgcaccagtgtgttcaaagtgatttccac 504

                                                                       
Query: 305 tttcctactagctcttcactctaaaatcatgcctatcccattgaatttctgtgctatgac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tttcctactagctcttcactctaaaatcatgcctatcccattgaatttctgtgctatgac 564

                                                                       
Query: 365 gacttcttactgagctgaatttcttttacaatgaaatcttggtctgtagaatgaattggg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gacttcttactgagctgaatttcttttacaatgaaatcttggtctgtagaatgaattggg 624

                                                                       
Query: 425 ctaagtgtattagtgagcaggagagtattattcaacagtattagagaaaattgaattata 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctaagtgtattagtgagcaggagagtattattcaacagtattagagaaaattgaattata 684

                                                                       
Query: 485 cttcttacaatactataaatcctccggttgtaaatttcaacataaaaagtttatatcaca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cttcttacaatactataaatcctccggttgtaaatttcaacataaaaagtttatatcaca 744

                                                                       
Query: 545 atatagtacataaaattttactggttttatgttgtgtcatgaattattttttaanatata 604
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 745 atatagtacataaaattttactggttttatgttgtgtcatgaattattttttaaaatata 804

                                                                       
Query: 605 attggaatctatacattagctaacatttctaatagtgaacactataataagatgaccttt 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 attggaatctatacattagctaacatttctaatagtgaacactataataagatgaccttt 864

                             
Query: 665 ctccatttgttcctacag 682
           ||||||||||||||||||
Sbjct: 865 ctccatttgttcctacag 882


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1082
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1072
Effective search space:   720384
Effective search space used:   720384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no416_k19.g1 MSMg01no416_k19.g1 CHROMAT_FILE:
MSMg01no416_k19.g1 PHD_FILE: MSMg01no416_k19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:21 2005
         (518 letters)



>mm_chr8_84751201_84752118
          Length = 918

 Score =  806 bits (417), Expect = 0.0
 Identities = 417/417 (100%)
 Strand = Plus / Minus

                                                                       
Query: 102 tgtaaatccatgcttattgttaccctatttattatagcctaaaatagttaaggaaaatgt 161
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 918 tgtaaatccatgcttattgttaccctatttattatagcctaaaatagttaaggaaaatgt 859

                                                                       
Query: 162 agtacatgtgctcagtgggactttatttagtcataaagaaattaaattatgacttttgta 221
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 agtacatgtgctcagtgggactttatttagtcataaagaaattaaattatgacttttgta 799

                                                                       
Query: 222 ggaagaatggtagaacgagaaattaagttaacacaggcatggaaaaacaaaatcatattt 281
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 ggaagaatggtagaacgagaaattaagttaacacaggcatggaaaaacaaaatcatattt 739

                                                                       
Query: 282 tttcttataagtagatactaaattataattttcataatccatctatctatgtgatgggct 341
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 tttcttataagtagatactaaattataattttcataatccatctatctatgtgatgggct 679

                                                                       
Query: 342 tagttacctgaaaatagacatgaaagaataaagaacaaggagggagtaagacaaatgaga 401
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tagttacctgaaaatagacatgaaagaataaagaacaaggagggagtaagacaaatgaga 619

                                                                       
Query: 402 gagaaaataataaaatggaataataggattggattaatttgtaaacaatttccaataatc 461
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gagaaaataataaaatggaataataggattggattaatttgtaaacaatttccaataatc 559

                                                                    
Query: 462 catttctctattcccacaacaatatagtactggataaagaagcttcactctttggtc 518
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 catttctctattcccacaacaatatagtactggataaagaagcttcactctttggtc 502


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space:   461264
Effective search space used:   461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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