Query= MSMg01no416_n09.b1 MSMg01no416_n09.b1 CHROMAT_FILE:
MSMg01no416_n09.b1 PHD_FILE: MSMg01no416_n09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:33 2005
(297 letters)
>mm_chr8_117254618_117255316
Length = 699
Score = 543 bits (281), Expect = e-159
Identities = 294/299 (98%), Gaps = 2/299 (0%)
Strand = Plus / Plus
Query: 1 gtataacctagagatgggcaaggcagccaggagctgctgttatttcaacccagtactgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtataacctagagatgggcaaggcagccaggagctgctgttatttcaacccagtactgtt 260
Query: 61 ttcagaaatcttagccatccccataccaaaaaccctttcctgaattcattgcatgtgccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcagaaatcttagccatccccataccaaaaaccctttcctgaattcattgcatgtgccc 320
Query: 121 catgtaaatacaccctaggagtggatggaacatgccctgtgaattataccttatttatta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catgtaaatacaccctaggagtggatggaacatgccctgtgaattataccttatttatta 380
Query: 181 tcgcagggacccttcttttttttttttt--ccttccttccatcaagctttggaattatgg 238
||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 tcgcagggaccctcctttttttttttttttccttccttccatcaagctttggaattatgg 440
Query: 239 gtcgaggcagtttttaatactctatttattttaggggtggaatatgtttttcttgcacc 297
|||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 gtcggggcagtttttaatactctatttattttaggggtggaaaatgtttttcttgcacc 499
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 699
Length adjustment: 9
Effective length of query: 288
Effective length of database: 690
Effective search space: 198720
Effective search space used: 198720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no416_n09.g1 MSMg01no416_n09.g1 CHROMAT_FILE:
MSMg01no416_n09.g1 PHD_FILE: MSMg01no416_n09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:33 2005
(529 letters)
>mm_chr8_117419037_117419959
Length = 923
Score = 953 bits (493), Expect = 0.0
Identities = 518/529 (97%), Gaps = 6/529 (1%)
Strand = Plus / Minus
Query: 1 agtttacatgcccaccatgatgaagaggatggggcagggtaggcagcaaaggcagagaga 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 723 agtttacatgcccaccatgatgaagaggatggggcggggtaggcagcaaaggcagagaga 664
Query: 61 agggaggaggaaaaaagtcttagagttcaaggctcccctctgtcaccctgggcacatgtc 120
|| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 ag---ggaggacaaaagacttagagttcaaggctcccctctgtcaccctgggcacatgtc 607
Query: 121 aatcatggtctctacttgggcctcagttccttgtttaaaataaaaggcaggaaaggaccc 180
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 606 aatcatggtctctacttgggcctcagttccttgtttacaataaaaggcaggaaaggaccc 547
Query: 181 ggtgcagagcaacctggccaaaaaaagtatgtgcaaagaatgtggaagacctggggaaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 ggtgcagagcaacctggccaaaaaaagtatgtgcaaagaatgtggaagacctggggaaag 487
Query: 241 tcacgtaattacagtgaggtaacctacaacttgcaatgtcatatgtacacattctgatat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 tcacgtaattacagtgaggtaacctacaacttgcaatgtcatatgtacacattctgatat 427
Query: 301 ggttgcccttacctgtaacatgtgaacgtgtcaatgggaatgcctcatacatgacaatcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ggttgcccttacctgtaacatgtgaacgtgtcaatgggaatgcctcatacatgacaatcc 367
Query: 361 aactctttcagttatcaataacatacacacatgtgtgatgtctcaggcatccatcctcac 420
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaccctttcagttatcaataacatacacacatgtgtgatgtctcaggcatccatcctcac 307
Query: 421 cttcgctccccccccccccccaaggaagactgctcagagacagtgtatgaaggactttgg 480
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 cttcgct---cccccccccccaaggaagactgctcagagacagtgtatgaaggactttgg 250
Query: 481 agtccagtttcagaaatattgatctgtcaggtgtggtagctcatatctg 529
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 agtccagtttcagaaatattgatctgtcaggtgtggtagctcatatctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 923
Length adjustment: 10
Effective length of query: 519
Effective length of database: 913
Effective search space: 473847
Effective search space used: 473847
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
