Query= MSMg01no417_m19.b1 MSMg01no417_m19.b1 CHROMAT_FILE:
MSMg01no417_m19.b1 PHD_FILE: MSMg01no417_m19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:48 2005
(343 letters)
>mm_chr8_26773685_26774427
Length = 743
Score = 619 bits (320), Expect = 0.0
Identities = 338/344 (98%), Gaps = 2/344 (0%)
Strand = Plus / Minus
Query: 1 gaaagaaaggaggaaaagctcaccaatccctctgtactgactacacactgaaataatgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 gaaagaaaggaggaaaagctcaccaatccctctgtactgactacacactgaaataatgct 484
Query: 61 taagtacattgagataaatgaactgtgtagatacaattaaaacaaaacaaaaacctactg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 taagtacattgagataaatgaactgtgtagatacaattaaaacaaaacaaaaacctactg 424
Query: 121 ctggtgcaaccaaacaaatcagcaggcacaattattccagtaggttgttttaatagcaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ctggtgcaaccaaacaaatcagcaggcacaattattccagtaggttgttttaatagcaat 364
Query: 181 ggttaattcagataaaagaaaaattttaataaaaatcatactttacaacaaagaaaaact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ggttaattcagataaaagaaaaattttaataaaaatcatactttacaacaaagaaaaact 304
Query: 241 aactctactttttataaacaggcaaactgcccagtttcttccatgactttcaggagctaa 300
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 aactctacaaattagaaacaggcaaactgcccagtttcttccatgactttcaggagctaa 244
Query: 301 gcccgatgttggctgcattg-tgcaagattaatctaccacagat 343
|||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 243 gcccgatgttggctgcattgct-caagattaatctaccacagat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space: 245156
Effective search space used: 245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no417_m19.g1 MSMg01no417_m19.g1 CHROMAT_FILE:
MSMg01no417_m19.g1 PHD_FILE: MSMg01no417_m19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:48 2005
(360 letters)
>mm_chr8_26576263_26577022
Length = 760
Score = 629 bits (325), Expect = 0.0
Identities = 349/363 (96%), Gaps = 12/363 (3%)
Strand = Plus / Plus
Query: 1 aggcagcgggag---aggacttctgaaatccgtcaacccggacccccttgcattttgcag 57
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 aggcagcgggaggagaggacttctgaaatccgtcaacccggacccccttgcattttgcag 257
Query: 58 aggggaccatagccaaacaccaccgctgcggcctaggacagcgaggtgcaactgaggctg 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 aggggaccatagccaaacaccaccgctgcggcctaggacagcgaggtgcaactgaggctg 317
Query: 118 gcacggcatcctcgatcggtgtctgagtatacagtgggtcctttctcctttctcagaagg 177
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 318 gcacggcatcctcgatcggtgtctgagtatacagtgggtcctttctcctttcccagaagg 377
Query: 178 aatgagatgacgttgcatctttcaactaaaatgcactcagagcagccccgtgcacaaggg 237
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 378 aatgagatgacgttgcatctttcaactaaaatgcactcagagcagccccgtgcaaaaggg 437
Query: 238 gcttgtcttaatggctggaatggttaaataacctagaaggcagcaagcactgtaccagac 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gcttgtcttaatggctggaatggttaaataacctagaaggcagcaagcactgtaccagac 497
Query: 298 agccctagacctagattcacttgactcctt--------tccctcctccctgcccccacct 349
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 498 agccctagacctagattcacttgactccttgactcctttccctcctccctgcccc-acct 556
Query: 350 ccc 352
|||
Sbjct: 557 ccc 559
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 760
Length adjustment: 9
Effective length of query: 351
Effective length of database: 751
Effective search space: 263601
Effective search space used: 263601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
