BAC Information

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BAC

Clone NameMSMg01-418I02
Chromosome8 (Build37)
Map Location 3,880,194 - 3,880,296
singlet/doubletsinglet
Overlap genenone
Upstream geneEG664801, EG209786, D630014A15Rik, Insr, A430078G23Rik, Arhgef18, Pex11c, 1700019B03Rik, Zfp358, Mcoln1, Pnpla6, C330021F23Rik, 2310057J16Rik, Xab2, Pcp2, Stxbp2, Retn, 1810033B17Rik, LOC664858, Trappc5, Fcer2a, Clec4g, Cd209a, LOC664870, Cd209e, Cd209d
Downstream geneCd209b, Cd209c, LOC664888, EG384770, EG664905, LOC664915, LOC664922, LOC631071, Cd209f, Cd209g, B130050I23Rik, BC068157, Lrrc8e, Map2k7, LOC100039590, Snapc2, Ctxn1, Timm44, Elavl1, Ccl25, LOC664977, Ppia-ps8_36.1, Lass4, Vmn2r-ps89, EG633533, BC003267, LOC665021, EG623133, EG665044, EG623223, LOC100040234, Shcbp1, EG622568, LOC669393, EG631359
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-418I02.T7 (MSMg01no418_i02.b1)MSMg01-418I02.TJ (MSMg01no418_i02.g1)
ACCAG513826AG513827
length832840
length of high quality
(start - end)
113 (44 - 156)418 (159 - 576)
definitionCHROMAT_FILE: MSMg01no418_i02.b1 PHD_FILE: MSMg01no418_i02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:43 2005CHROMAT_FILE: MSMg01no418_i02.g1 PHD_FILE: MSMg01no418_i02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCAAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATCTGAGAGGATC
CGCGGAATTCTCTTTATACTGGATTAAACTGAATTATTTGGGGCTTTTTG
ATGTTTAGTTTTTTTTGACATACACACACAGAGAGGTATATGTATATGTG
TGTGTGTCTTCNCTTCCCTTTGTTTGCGTTCCCTGCTCCCTCTCTCTTTG
CTTCTCTTATCCCCTTTTCCTTCCTTTGTCTCGTTCTTTCCCTCTTTCCT
TCCTTTTTTTTCCCCTCCTCCTTCTTCCCCTTCTCCTTTTCTCCCCCTCT
CCTCTTCTCCCCTCCCCCCTTTTTTTTTTTTTCCCCTCCCCTTTCCTCTT
TTCCCTCCCTCTCTTTTCTTCTCCCCCCCTCCTTTTTTTCCTTCCTCTCC
TCCTTCCCCTTTTCTTTCCTCCCCCCTCCCTTTTCTCTCTTCTCCCCCTC
TTCCCATTCTTCCCCCCCTCCCCTCCTTCTTTCCCCCCTTTCCCCCTTTC
CCTTCCCCCCTCCCTTTTCCCTCCTTTTTCTCCTCCCTCTTCCCTTCTCC
CCCTCCTTTCCTCCCCCCCTCCTCCTCTTTCCCTTTTTTCCCCTCTTCCC
TTCCCCTCTTTTTTTCCCTCTCTCCTCTTCTTCCTTCTCTCCCCTCTCTC
GACCCCACCCTTTTTTCCTTCTTCCCTTTTTTCCCCCCTTTCCCTTCTTC
TCCTCCCTTTCCCTCCCTCTTCCCCTTTCCTCCCTTTCTCCCCATTCCCT
CCTTTAATCCTTTCCTCCTCTTCCTCTTTTTCTCCCCCCCTTTTCCGCTC
TTTCCCCTTTTCCCCACTCTTTCCTCTCTTTT
TGGAGNAGTGAGGGAGGGAGGCAGAGGAGAGAGAGGGAAGGGGGCAGAGA
GGAGGGGAGAGGNNGGNGAGGGGAGGAGTAGAGCAATTATAXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTCAGTTCCTATTGGTATGTCTCCTTTTTCATTTTTCATTTT
GTTAATTTAGATACTGTCTCCATGATTTTTAGTTAATTTGGCTAAGGGTT
TGTCTATCTTGTTGCTTTTCTCGATGAACCAGCTCTTGGATTTGTTGATT
CCCTCTGAATTGTTTCTTTTTTGTTTTGTTTTCTTTTCTTTTTTTAGTTT
TTTTATTAGATATTTTCTTTATTTACATTTCAAATGCTATCCCCAAAGTC
CCCTAAACCCTCCCCCTGCCCTGCTCCCCAACCCACCCACTCCCGCTTCC
TGGCTCTGGCATTCCCCTGTACTGGGGCATATAATCTTCGATAGACCAAG
GGCCTCTCCTCCCAATGATGGCTGACTAGGCCATCTTCTTTTACATATGC
TCTGGGGGTACTGGATAGTTCATATTGTTGTTCCTCCTATAGGGTTGCAG
ACCCCTTCCGCTCCCTGGGTACTTTCTCTAGTTCCTCCATTTGGGGGGTC
TATGCTCTCTCTTATTGATAAACTGTGTACATCCTCTTTCTGTATTTTGC
AAGTACATGAGATAATGCTCCTCTATTATACAGCTATAGTTTTCTTTGGT
TTTCTATTTCATTTATTTTTTGTTTTTTGATTTTCGAGAGACTTTACTCG
GCCGTACATCAGACCCCTTTGTTATATGTGTTTTGGTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no418_i02.b1 MSMg01no418_i02.b1 CHROMAT_FILE:
MSMg01no418_i02.b1 PHD_FILE: MSMg01no418_i02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:43 2005
         (113 letters)



>mm_chr8_3879983_3880496
          Length = 514

 Score =  176 bits (91), Expect = 4e-49
 Identities = 100/103 (97%), Gaps = 1/103 (0%)
 Strand = Plus / Plus

                                                                       
Query: 12  gaattctctttata-ctggattaaactgaattatttggggctttttgatgtttagttttt 70
           |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 gaattctctttagaactggattaaactgaattatttggggctttttgatgtttagttttt 271

                                                      
Query: 71  tttgacatacacacacagagaggtatatgtatatgtgtgtgtg 113
           ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 272 tttgacacacacacacagagaggtatatgtatatgtgtgtgtg 314


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 113
Length of database: 514
Length adjustment: 8
Effective length of query: 105
Effective length of database: 506
Effective search space:    53130
Effective search space used:    53130
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)