Query= MSMg01no418_k04.b1 MSMg01no418_k04.b1 CHROMAT_FILE:
MSMg01no418_k04.b1 PHD_FILE: MSMg01no418_k04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:53 2005
(240 letters)
>mm_chr8_48568895_48569534
Length = 640
Score = 433 bits (224), Expect = e-126
Identities = 236/240 (98%)
Strand = Plus / Minus
Query: 1 catcggctattaacacgtgccatttatctcacccatctccttattaaatcacttcgctta 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 440 catcggctattaacatgtgccatttatctcacccatctccttattaaatcacttcactta 381
Query: 61 taaatatttcaatataatcctgtattattatatctaataaatcagtaattccttgaaatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 taaatatttcaatataatcctgtattattatatctaataaatcagtaattccttgaaatt 321
Query: 121 gtctagtacacaatataaacacagtttttcctgaatgatgaagctgtgtttttacagcta 180
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gtctagtacacaatataaatacagtttttcctgaatgatgaagctgtgtttttacagcta 261
Query: 181 gctttggtaaatcaagatcactttgagttcagtcatacttacctattgatggcttgacac 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 260 gctttggtaaatcaagatcactttgagttcagtcatacttagctattgatggcttgacac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space: 145761
Effective search space used: 145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no418_k04.g1 MSMg01no418_k04.g1 CHROMAT_FILE:
MSMg01no418_k04.g1 PHD_FILE: MSMg01no418_k04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:53 2005
(504 letters)
>mm_chr8_48435858_48436764
Length = 907
Score = 965 bits (499), Expect = 0.0
Identities = 504/507 (99%), Gaps = 3/507 (0%)
Strand = Plus / Plus
Query: 1 aaaatcgtggaggccactcctttacagaatcaaacacttaaaacaaatgtgtgccattca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaatcgtggaggccactcctttacagaatcaaacacttaaaacaaatgtgtgccattca 260
Query: 61 gcctacagttccacaggggtgggaatccattctgttattcccacctgccctccttggtca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcctacagttccacaggggtgggaatccattctgttattcccacctgccctccttggtca 320
Query: 121 cgtcctctacactagattacgttgtaaaatctaagatgccagaaggcatattgtggccaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgtcctctacactagattacgttgtaaaatctaagatgccagaaggcatattgtggccaa 380
Query: 181 gcacttcatgcttaaacactgagattcttgggttcagggggaaaatggacg---tcttcg 237
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 381 gcacttcatgcttaaacactgagattcttgggttcagggggaaaatggacgacgtcttcg 440
Query: 238 ttaacacagtgtacgcaggagccagtcaaactacagaaggtctcagacttaccgagcagg 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttaacacagtgtacgcaggagccagtcaaactacagaaggtctcagacttaccgagcagg 500
Query: 298 atacagtgtccatgtccacttggagacgatgctccctgtttctaaacaacctccagtgtg 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atacagtgtccatgtccacttggagacgatgctccctgtttctaaacaacctccagtgtg 560
Query: 358 cgctgcactggaaagctcagtgacagttaactagctgacttctgcaacctgccattaatt 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cgctgcactggaaagctcagtgacagttaactagctgacttctgcaacctgccattaatt 620
Query: 418 gcccttttcaagttaaaatggctccattaattttatgtgcctgtctccccagcaaacgcc 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcccttttcaagttaaaatggctccattaattttatgtgcctgtctccccagcaaacgcc 680
Query: 478 tttccaagaaagtttccatttctcacc 504
|||||||||||||||||||||||||||
Sbjct: 681 tttccaagaaagtttccatttctcacc 707
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 907
Length adjustment: 10
Effective length of query: 494
Effective length of database: 897
Effective search space: 443118
Effective search space used: 443118
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
