BAC Information

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BAC

Clone NameMSMg01-420B08
Chromosome8 (Build37)
Map Location 109,890,422 - 109,890,914
singlet/doubletsinglet
Overlap geneNfat5
Upstream geneZfp90, 6030452D12Rik, Cdh3, LOC100042734, Cdh1, Tmco7, Has3, 5830457O10Rik, Cirh1a, EG234703, Sntb2, Vps4a, Cog8, Nip7, Tmed6, Terf2, EG667847, Cyb5b, LOC100042791
Downstream geneNqo1, Nob1, Wwp2, LOC100042812, Psmd7, LOC100041744, LOC668038
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420B08.T7 (MSMg01no420_b08.b1)MSMg01-420B08.TJ (MSMg01no420_b08.g1)
ACCAG515032AG515033
length690745
length of high quality
(start - end)		70 (396 - 465)493 (71 - 563)
definitionCHROMAT_FILE: MSMg01no420_b08.b1 PHD_FILE: MSMg01no420_b08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:48 2005CHROMAT_FILE: MSMg01no420_b08.g1 PHD_FILE: MSMg01no420_b08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTCAACCAAAATTGGGGCGCAAAAGATACTAATTTCAAGAGGGCGGAAN
CNNNTAATACAGCAGGGGGCGCCGGAAAAAGGGNNCGGGGNGGAAAGGGN
NGAATTGCCCCCCCCCCGAGCNCANAGCCGCGGAAACACAGGACGGACAC
AGNGGGAAGAAAAGCCCCGAGAGGGCCCGAAGCCGGCNCCGCAAAANAAA
GNCGCAANAAAAGACAGGCGAGACTTTTTTTGTACAAAAAGCAGCGCGCA
CAGTCTTTCCAGCTTTTAACCACAGGGCCCCCCTTTTTTTTTTTTTTTTC
AGAANAAGGGACCNCGGGGAGGAAAAAGATATTTGAAAGAAACCCTTCCA
GAAACACACGTTGGAAAAATACAAACAAATTCAAGTTTAAACAGTTTCCT
ATGCTTGGGGTGTTGCCGGTGCTAACGAAATGACAAACTTATAGGTTGCA
TAATCTGAATCTTCAGCTAAATACCAGAAAAGATGCGTGGAATATAGGTT
GTTACGAGAGATTTATTAGTATGCGCCTGGCAATAATTGCACCTTTACCT
CATTTAACCAATGCAAACTTTGGGTCCCGCGTTTAGATGGAAAGTTCCAC
ATCCCTGCGAATTGACTTTTTTCTTTTTTCAACCTCCAGTTCCGGGGGCC
GGGAATTCCGAAAAAAAAATCTCAAAGCAAAATCGGCCTA

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATTCCCATGAGATGAAGTACTACAAGTTGG
TTTTAGGACTAAGGAATCAAAGATGTGAGATTAAGGCCAACCTGGGCTAC
AGAGGAAGACCCTGCCCCCAAAATGAGTTGATTTAATGAAAGCACCAATT
TTAGCATTTTCAGAAGTAGCAGCATTTTGATTATGGTTCCTTCTCTACTC
TCTTTTTAATTCTCCTCTTGTTTTCCCCATTGCAGTGTTACTGATGATCC
ACAATATGGAATTCTTGAATTTATTTAGTTGTAGTTACACACAAACTATC
AGATTAATGTTCTCTTATTATTCTTATTTGGCTAAGCATATCAATAACTG
CTTTTTCTGCTTGTTTGGTTATCTTTACAATACTGAAAGTCAGATATTGT
CATAAAGAATCAGTCTTACACTGACTTCTAGTGATACTGTAGAGTAGAAA
GCTTATTCTGTGTGTAATCTTAGAAATAATTTTTGGAGTAATATATGTGA
TTATTTAATTTATATGTGCATATTGTTTGTGGCCTTTTATTTTTTAGACT
ACCAAGAGCATTGGATCAACCCAGCAAACCTTAGAAACTATTTCTAACAT
AGCGGGGGGTGCACCCTTCTCCTCACCGTCATCATCTTCCCACTTAATTC
CCGAAAGGGAGAATCATCCATAGCTTTTCCCCCAGGAATACTACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_b08.g1 MSMg01no420_b08.g1 CHROMAT_FILE:
MSMg01no420_b08.g1 PHD_FILE: MSMg01no420_b08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:48 2005
         (493 letters)



>mm_chr8_109890222_109891114
          Length = 893

 Score =  922 bits (477), Expect = 0.0
 Identities = 489/493 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcccatgagatgaagtactacaagttggttttaggactaaggaatcaaagatgtgaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcccatgagatgaagtactacaagttggttttaggactaaggaatcaaagatgtgaga 260

                                                                       
Query: 61  ttaaggccaacctgggctacagaggaagaccctgcccccaaaatgagttgatttaatgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaaggccaacctgggctacagaggaagaccctgcccccaaaatgagttgatttaatgaa 320

                                                                       
Query: 121 agcaccaattttagcattttcagaagtagcagcattttgattatggttccttctctactc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcaccaattttagcattttcagaagtagcagcattttgattatggttccttctctactc 380

                                                                       
Query: 181 tctttttaattctcctcttgttttccccattgcagtgttactgatgatccacaatatgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctttttaattctcctcttgttttccccattgcagtgttactgatgatccacaatatgga 440

                                                                       
Query: 241 attcttgaatttatttagttgtagttacacacaaactatcagattaatgttctcttatta 300
           ||||||||| |||  ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 441 attcttgaacttacatagttgtagttacacacaaactatcagattaatgttctcttgtta 500

                                                                       
Query: 301 ttcttatttggctaagcatatcaataactgctttttctgcttgtttggttatctttacaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcttatttggctaagcatatcaataactgctttttctgcttgtttggttatctttacaa 560

                                                                       
Query: 361 tactgaaagtcagatattgtcataaagaatcagtcttacactgacttctagtgatactgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tactgaaagtcagatattgtcataaagaatcagtcttacactgacttctagtgatactgt 620

                                                                       
Query: 421 agagtagaaagcttattctgtgtgtaatcttagaaataatttttggagtaatatatgtga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agagtagaaagcttattctgtgtgtaatcttagaaataatttttggagtaatatatgtga 680

                        
Query: 481 ttatttaatttat 493
           |||||||||||||
Sbjct: 681 ttatttaatttat 693


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space:   426489
Effective search space used:   426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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