BAC Information

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BAC

Clone NameMSMg01-420B14
Chromosome8 (Build37)
Map Location 90,412,243 - 90,412,703
singlet/doubletsinglet
Overlap geneZfp423
Upstream geneBC004022, LOC666960, EG625298, EG330819, Cbln1, LOC100040294, 4933402J07Rik
Downstream geneLOC100040328, 5033428A16Rik, Heatr3, Papd5, Adcy7, Brd7, LOC100040369, Nkd1, 9130017C17Rik, Nod2, Cyld, LOC675985
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420B14.T7 (MSMg01no420_b14.b1)MSMg01-420B14.TJ (MSMg01no420_b14.g1)
ACCAG515044AG515045
length327764
length of high quality
(start - end)
---463 (67 - 529)
definitionCHROMAT_FILE: MSMg01no420_b14.b1 PHD_FILE: MSMg01no420_b14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:49 2005CHROMAT_FILE: MSMg01no420_b14.g1 PHD_FILE: MSMg01no420_b14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGGGGNTAAATGGGGAANAATCAAGGGNCCGTCCAAGGGAGGGAAAGGGA
ANAAGANGCAACAGGAAAGAAGGAAAGGGGGAAAGGGGGGAAAAGAAAGG
GGNAAGGAAAATGGAAAAAGGGGGAAGGTTGGAAAAAAGTTTTTTTAGAA
AGGGGGGATTTTTAGGAAGGGGAAATGGAAAGAATAGAGGGTGGGGGGGT
AAGGGTTTTTAAAGGGTAAGGGTTTTTTGGGGTTTCAATTAGGGGGGGAA
AAGGGTTTTAGGGGAAAATTTAAAAAAGGAAAAGGTTATGGGGGAATGGG
TGGTTGGAGTTTTTAGGGAAAATTTTT
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTGTAACTGCACCTAACAGATCAAGATAGAGCTGG
CACAGCAGCCTCAGACAGCAGAAAGCCCAGAGCCTGCCCTATGACTTATA
AGCCATTTTGGGTACATGGCTACCTCTACCCACCTCCAGAAGCCACATCC
AGTATCACACTCAATTCTCACTGCCTGTCCAGGTGGTATGGCCCACCCAA
TGCCAGGTGCCCACTGCATGCATGTAACCTGATCCCCACAGATGCAACAG
CTCATATTCTCTCATCCCCAAAGTCCCTCAGTATCTACTGGGAGCCGGAG
AGCCTCGTAGTAGTGGCACTTCAATCTAAGTCTTGATCAGTGGCCTCGAA
GTGCCCCACAGCTCAATAAATAAGCCTCCTCCAGAATCAGCTATTGCAGC
TTACCAGGCCTTGGAAGGCCTACACTCTAGCCTTGGCTCGTAGTCTTCAT
TCTGGCATCCTGTGAGATCACTCTCCAGAGAACCTGACCACTTCTGTCCG
GGCTTGACTGGCACTCCCTGAGGCTCACCCAGAAGGGAGTGAGTGGNATC
CCCCTGCCTCCTGCTTATACACAGCCTGAGGGGTGTGCAACCAAAGCCCA
GTTCTAGGGTCTGTTTATTGCCTTCCAGCACCTAACCCCGCCCAAAGAGA
CCGGTTTTTCTTTTAAAACTGGGCGCCCCGGAATCTGTTTCCAGGTGGGG
GAAGAAACCCTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_b14.g1 MSMg01no420_b14.g1 CHROMAT_FILE:
MSMg01no420_b14.g1 PHD_FILE: MSMg01no420_b14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:49 2005
         (463 letters)



>mm_chr8_90412043_90412903
          Length = 861

 Score =  841 bits (435), Expect = 0.0
 Identities = 456/463 (98%), Gaps = 2/463 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtaactgcacctaacagatcaagatagagctggcacagcagcctcagacagcagaaagc 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtaactgcacctaatagatcaagatagagctggcacagcagcctcagacagcagaaagc 260

                                                                       
Query: 61  ccagagcctgccctatgacttataagccattttgggtacatggctacctctacccacctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccagagcctgccctatgacttataagccattttgggtacatggctacctctacccacctc 320

                                                                       
Query: 121 cagaagccacatccagtatcacactcaattctcactgcctgtccaggtggtatggcccac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagaagccacatccagtatcacactcaattctcactgcctgtccaggtggtatggcccac 380

                                                                       
Query: 181 ccaatgccaggtgcccactgcatgcatgtaacctgatccccacagatgcaacagctcata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccaatgccaggtgcccactgcatgcatgtaacctgatccccacagatgcaacagctcata 440

                                                                       
Query: 241 ttctctcatccccaaagtccctcagtatctactgggagccggagagcctcgtagtagtgg 300
           ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 441 ttctctcatccccaaagtccctcagtatctactgggaaccg-agagcctcgtagtagtgg 499

                                                                       
Query: 301 cacttcaatctaagtcttgatcagtggcctcgaagtgccccacagctcaataaataagcc 360
           |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 500 cacttcaacctaagtcttgatcagtggcctcgaagtgctccacagctcaataaataagcc 559

                                                                       
Query: 361 tcctccagaatcagctattgcagcttaccaggccttggaaggcctacactctagccttgg 420
           |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 560 tcctccagaatcagctat-gcagcttaccaggccttggagggcctacactctagccttgg 618

                                                      
Query: 421 ctcgtagtcttcattctggcatcctgtgagatcactctccaga 463
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ctcgtagtcttcattctggcatcctgtgagatcactctccaga 661


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 861
Length adjustment: 10
Effective length of query: 453
Effective length of database: 851
Effective search space:   385503
Effective search space used:   385503
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)