BAC Information

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BAC

Clone NameMSMg01-420G12
Chromosome8 (Build37)
Map Location 101,849,270 - 101,849,437
singlet/doubletsinglet
Overlap geneCdh8
Upstream genenone
Downstream geneA330008L17Rik, LOC667531, LOC100042069, LOC436054, LOC100042078
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420G12.T7 (MSMg01no420_g12.b1)MSMg01-420G12.TJ (MSMg01no420_g12.g1)
ACCAG515279AG515280
length721750
length of high quality
(start - end)
---169 (453 - 621)
definitionCHROMAT_FILE: MSMg01no420_g12.b1 PHD_FILE: MSMg01no420_g12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:14 2005CHROMAT_FILE: MSMg01no420_g12.g1 PHD_FILE: MSMg01no420_g12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTCACCAAAAGTGGGGCGATAAAANGANNATTTTCGTACCCGACGGGG
NAANNNTTTTTTCAAGAACGCAGAGGNGNANANNNNANGANGACGCGGAC
GAGGAGGAGCANCTTTGCCCGCAGCAAGAGGANNAGAAAAGNCGAAGAAA
AAAAAACTGCTGCAGGAGACACCAGGACGACAAACAAAGGCGGCACCAAC
AAAAAGGGCAGCAGCGAAGAGGACGCCCCACAGAACCCNNCATTTTTTAC
TCGCGCGCAACATCTCTACATATATCCCTAGTGTTGAAACTGCAAGATTC
AGGCAAGTTTTCGTGTTATGCGAGANACAAAAGGGGACCCACCCAAAACC
TTGCCCCCCCCCGCATGAACCGCAATGGGTAGGGTGGATATGTAACACTG
ACGCCATGACGTTTTGCACAAGCATAACACAACCCCTTTAAGAACCACGC
TGGGACAATTTGATACACTGACGACATAACCAGGCACTAATGCCAGGCGA
AAATAATAGCAGTAGCTTTGCGTACAAATGACTGAAACTAAGACATGTGG
GTCGATAACGCACAAAGTAGGATCTGGACAACATTTAACATATTATGGTG
AATAAATGCATCAAGATTGCTCTGCACANAAAAGTCCTATTGTTTTCTTA
TCCCCAGGCCTGCTGCCTTCCCTCTTCCTTGCCTTACTTACTTACCGCCT
TACCTTCCACCGCTCCTTTGT
TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTATTATCACAGAATCTGTTATTCTTAACAAGCAC
GATTTAAGACACTGCTAACAGAAAATATAATTTTTTCAGATGCTTCTCAG
TTGCCTCTTCCTAAACACATGGGAGAAGGGAGCATCTTGGGCAGATGTAG
AGTATAAAGCTATTATTGTTGTCCTATTTTAACATTCTTACTTCATCTAA
ATTATTAGCACCTTCACATATTTTTCTATTACAACAGAACTAGTATTGGC
AGTTAAATAATTAACTGGTTTTAAGAATGAAATAAGTTAGATGCATGAAA
TCATTATATTTTCACAGATGTGATATCAATACCTAAAAATGAAATTGTAG
CAATGTGCCAGGAATAGTTGTGATTGCTCATTTCCAAGAGAGAGAAAAAT
ACAAGGAGGGGGTTCTTAATTGAAGGAGATCAGTAAGATGCATATATTAA
AATTAAAGGGAAAATAAGTATACTTATTTATAGCCATATAAATATAAAGA
GAATTTATGTGATTTTCACAGTCATTTACCACTTACATCACATAAACAAT
GATGATAATACCTGAGTAAAACATTGTGTGTTTGGGTTTGTCATGGAAAC
ATGGTAGAGTATACTTATACAAGCCTACATATGTCACTCATTTGAAATGG
ATTGTTTTTAAACAACATATTGTTTTATGCTCTTGGAGATCTATATATTT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_g12.g1 MSMg01no420_g12.g1 CHROMAT_FILE:
MSMg01no420_g12.g1 PHD_FILE: MSMg01no420_g12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:14 2005
         (169 letters)



>mm_chr8_101849070_101849638
          Length = 569

 Score =  281 bits (145), Expect = 2e-80
 Identities = 163/169 (96%), Gaps = 1/169 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggagggggttcttaattgaaggagatcagtaagatgcatatattaaaattaaagggaa 60
           ||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||
Sbjct: 201 aaggagggggttcttaattgaaggagatctgtaagatgcatatattgacattaaagggaa 260

                                                                       
Query: 61  aataagtatacttatttatagccatataaatataaagagaatttatgtgattttcacagt 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 aataaatatacttatttatagccatataaatataaagagaatttatgtgtttttcacagt 320

                                                            
Query: 121 catttaccacttacatcacataaacaatgatgataatacctgagtaaaa 169
           |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 catttaccacttacatcacataaacaatgatgataatacctgag-aaaa 368


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 569
Length adjustment: 8
Effective length of query: 161
Effective length of database: 561
Effective search space:    90321
Effective search space used:    90321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)