BAC Information

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BAC

Clone NameMSMg01-421D06
Chromosome8 (Build37)
Map Location 33,811,313 - 33,811,789
singlet/doubletsinglet
Overlap genenone
Upstream geneEG330731, LOC100041340, Nrg1, 2010007E15Rik, EG666589, EG546052
Downstream geneLOC100042715, LOC628408, EG628412, Wrn, Purg, LOC666630, Hmgb1-rs17, Tex15, Ppp2cb, Ubxd6, Gsr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-421D06.T7 (MSMg01no421_d06.b1)MSMg01-421D06.TJ (MSMg01no421_d06.g1)
ACCAG515886AG515887
length795812
length of high quality
(start - end)
478 (48 - 525)301 (61 - 361)
definitionCHROMAT_FILE: MSMg01no421_d06.b1 PHD_FILE: MSMg01no421_d06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:17 2005CHROMAT_FILE: MSMg01no421_d06.g1 PHD_FILE: MSMg01no421_d06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAATCCGCGGA
ATTCTTTAGCATCCGTCACTACAAAGCCAAGATCAGAGTATAAAACAGTC
TGCCAGGAGTTGGATTTAAGTTGTTGGAACCACACAGAGGACTGTCTTCT
GCACCTGAATTCCATGACTCTACAATGCAGTTAGAGACCAGAGTCAGCCT
GTCCTCGGCACTGTGGCAGTGCCCTGGCAACCACCGGTTCTGAATGAGAA
CATCCACAGGATGCTATTAGAGCAGACTAAAGTATTTGGCAACATGAAAA
ATTAAACCAGCTCAAGAAAAAATGATAATTATCCAAATTCCGTGAATGAC
ATCTTTCCCAATGATCACATCTCAGTTTGGCTCAAGTAGGACGTATTTCT
TCTCTGAGAATAGAATATCTTAGACAGCATTAGGTAATATTGTGAGTGAT
GGAAACTGCAAAGAAAACAGAATAAATGCTGGAAGTTTATCCTCAAGGAA
CATGTGCAAAGACTATCCTTGAGAAGAAATGGTAACCATGTCTGCTATCT
ACCTCTGCCGCCCACATGGCATAAAGAAACTGTACAGTAACAGCATTCTT
AGTACCAGTGCTCACAATCTCTCCTTCTTTTTTTCCCTAATAGAGCAAGA
TATAACATTTGCAAATTTTTTTTGTTCCAATATTGTTTTCCTTTATCCTA
GGAATTGTTCCCTATTTAAATCCCCTTTCCCATAGGAGGAAATATTATTG
TCGCCAGCTATTTATTTTCGATTTCTCATAAAATTACCGAAACAN
ATGATGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTTCCGAATTCCTAGGGACTAGTGGTTTATTTGAGCCTTA
TAATTCTAACTCTCTGAATATTAATATTTATATGTCTATAGATATTTCTG
TGTCCTTCTTAATCATTGTATGTGGGTGTGGAGGCAGATAATATGTCTCC
TTCATTTTACACACTGACAAAGATAGGGAGCCTTCATGAACACCTGGGCT
TGATTTAGATAAGATTCTAGAATTTATACAGAGTCTGTCATGGGATGAGA
CTTAGGATCTATGGAGGTGGTAATATATGTTTTCTCCAGGGAAGACCATG
AGTCAATGGGATGAGAATGTATCCTGCAGATAGAATGTTGGATGCTCCAG
TGACCTTTGCATCTCAGTGTGTATGCTACTATGGATTCACTTCCTCTTTG
AGTAGATATGATTACACTATTTTTGATGGATATTTTTCTCTATATATTAT
TACCGTTGTTATCTTATCTTGTGAATAGAGCTTCTCTCTTCTGCGCTTTT
ATAATTTTTTTTCTTATTTTTATCTTGCTTTCCCTATTTCCCCTTGTTTT
GATATTGTTTTGTTACATCTGCATTTCTTTTGTCTTTACTTTCTCCTTTC
TTTTCTCTTTCTTTTTATTTTTTTCTTTTTTCTTCTTCTAAACTATGTTC
CTTCCTATTCTTTTATCCCTATCTCTATTATTTTTTAATACACTTATTCT
TCTTTTCTTTTCTTTTACTTTACTTATTATTTTACATCTTCTTCCACATT
ATTTTTTTTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no421_d06.b1 MSMg01no421_d06.b1 CHROMAT_FILE:
MSMg01no421_d06.b1 PHD_FILE: MSMg01no421_d06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:17 2005
         (478 letters)



>mm_chr8_33811112_33811989
          Length = 878

 Score =  899 bits (465), Expect = 0.0
 Identities = 474/477 (99%)
 Strand = Plus / Plus

                                                                       
Query: 2   gaattctttagcatccgtcactacaaagccaagatcagagtataaaacagtctgccagga 61
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gaattctttagcatccgacactacaaagccaagatcagagtataaaacagtctgccagga 261

                                                                       
Query: 62  gttggatttaagttgttggaaccacacagaggactgtcttctgcacctgaattccatgac 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gttggatttaagttgttggaaccacacagaggactgtcttctgcacctgaattccatgac 321

                                                                       
Query: 122 tctacaatgcagttagagaccagagtcagcctgtcctcggcactgtggcagtgccctggc 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tctacaatgcagttagagaccagagtcagcctgtcctcggcactgtggcagtgccctggc 381

                                                                       
Query: 182 aaccaccggttctgaatgagaacatccacaggatgctattagagcagactaaagtatttg 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aaccaccggttctgaatgagaacatccacaggatgctattagagcagactaaagtatttg 441

                                                                       
Query: 242 gcaacatgaaaaattaaaccagctcaagaaaaaatgataattatccaaattccgtgaatg 301
           ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 442 gcaacatgaaaaattaaaccagctcaagaaaaaatgataaagatccaaattccgtgaatg 501

                                                                       
Query: 302 acatctttcccaatgatcacatctcagtttggctcaagtaggacgtatttcttctctgag 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 acatctttcccaatgatcacatctcagtttggctcaagtaggacgtatttcttctctgag 561

                                                                       
Query: 362 aatagaatatcttagacagcattaggtaatattgtgagtgatggaaactgcaaagaaaac 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 aatagaatatcttagacagcattaggtaatattgtgagtgatggaaactgcaaagaaaac 621

                                                                    
Query: 422 agaataaatgctggaagtttatcctcaaggaacatgtgcaaagactatccttgagaa 478
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 agaataaatgctggaagtttatcctcaaggaacatgtgcaaagactatccttgagaa 678


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space:   406224
Effective search space used:   406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)