Query= MSMg01no421_p01.b1 MSMg01no421_p01.b1 CHROMAT_FILE:
MSMg01no421_p01.b1 PHD_FILE: MSMg01no421_p01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:17 2005
(481 letters)
>mm_chr8_78563925_78564805
Length = 881
Score = 913 bits (472), Expect = 0.0
Identities = 475/476 (99%)
Strand = Plus / Plus
Query: 6 gaattcacacactgaggaaaccacatctgctaagggcttcccactgtgtcataacatgat 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcacacactgaggaaaccacatctgctaagggcttcccactgtgtcataacatgat 265
Query: 66 gtgtggagtcatgtgatgagaaggcttttttcccccagctataacacactgtacagtttt 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gtgtggagtcatgtgatgagaaggcttttttcccccagctataacacactgtacagtttt 325
Query: 126 atttaaaatgtgcatatgaaaacacataaaagtagtgacatacaatgtagccgactaaag 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 atttaaaatgtgcatatgaaaacacataaaagtagtgacatacaatgtagccgactaaag 385
Query: 186 aaaataacattcgaaaaagatcttccttatctctcacaatcatccattggacggagcaca 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aaaataacattcgaaaaagatcttccttatctctcacaatcatccattggacggagcaca 445
Query: 246 aggtccccagtgaaggagctaggaaaagtaccaaaggagctgaaggggtctgaagcccca 305
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 446 aggtccccagtgaaggagctagaaaaagtaccaaaggagctgaaggggtctgaagcccca 505
Query: 306 taagaggaacaacaatatgaactaaccagtacccccagagctccttggaactataccacc 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 taagaggaacaacaatatgaactaaccagtacccccagagctccttggaactataccacc 565
Query: 366 aagcaaagaaaacacatggtgaaacttgtggctctagctgcatatgtagcagaggatggc 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 aagcaaagaaaacacatggtgaaacttgtggctctagctgcatatgtagcagaggatggc 625
Query: 426 ctagtcggtcatcaatgggaggagaggctcttggtcctgtgaaggttctatgcccc 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ctagtcggtcatcaatgggaggagaggctcttggtcctgtgaaggttctatgcccc 681
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space: 410241
Effective search space used: 410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no421_p01.g1 MSMg01no421_p01.g1 CHROMAT_FILE:
MSMg01no421_p01.g1 PHD_FILE: MSMg01no421_p01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:17 2005
(489 letters)
>mm_chr8_78597944_78598831
Length = 888
Score = 899 bits (465), Expect = 0.0
Identities = 483/489 (98%), Gaps = 1/489 (0%)
Strand = Plus / Minus
Query: 1 agtagatctgggacctggtgacattaggtatgagcagggacatggaacagttcaccacag 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 688 agtagatctgggacctggtggcattaggtatgagcagggacatggaacagttcaccacag 629
Query: 61 ttaacaaaaggcagaagtaaatgtatggcaacaggttgaagcactcactcagttttaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ttaacaaaaggcagaagtaaatgtatggcaacaggttgaagcactcactcagttttaaat 569
Query: 121 catctcaggcctggtttccaaggcatagagtaataagttatccccacttctggcactatg 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 568 catctcaggcctggtttccaaggcatagagtaataagttatccccacttctggcaccatg 509
Query: 181 tgataaaaaaatctaacttctgatcctgacctcttgactctcgtggccttgaaatatctt 240
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tgat-aaaaaatctaacttctgatcctgacctcttgactctcgtggccttgaaatatctt 450
Query: 241 catcatcagctttagcagttgatattagattcaggatggaaattaacgatagaatgggaa 300
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 449 catcatcagctatagcagttgatattagattcaggatggaaattaacaatagaatgggaa 390
Query: 301 ggcagcgcttgtgtggggtctcaggctgtctttctaagatcctcttaggctctgtgaacc 360
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 389 ggcagcgcttgtgtggggtctcaggctgtctttctaagatcctcttagactctgtgaacc 330
Query: 361 ccaggctgtgtctctgatatattcctgctaatctaagacagtaacttaggaaattttctt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ccaggctgtgtctctgatatattcctgctaatctaagacagtaacttaggaaattttctt 270
Query: 421 cattctttattatcagtttgatttgtattcctattttatatccttatataatggtctatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 cattctttattatcagtttgatttgtattcctattttatatccttatataatggtctatt 210
Query: 481 agttaatct 489
|||||||||
Sbjct: 209 agttaatct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 888
Length adjustment: 10
Effective length of query: 479
Effective length of database: 878
Effective search space: 420562
Effective search space used: 420562
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
