Query= MSMg01no422_j18.b1 MSMg01no422_j18.b1 CHROMAT_FILE:
MSMg01no422_j18.b1 PHD_FILE: MSMg01no422_j18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:05 2005
(553 letters)
>mm_chr8_106190512_106191464
Length = 953
Score = 733 bits (379), Expect = 0.0
Identities = 512/565 (90%), Gaps = 20/565 (3%)
Strand = Plus / Plus
Query: 3 ggaattccttg------attt-tccttttgccgtcaggatatctaatttgtttcttcttt 55
||||||||||| |||| || ||||| ||||||||||||||||||||||||||||
Sbjct: 195 ggaattccttgaaggacatttatc--tttgctgtcaggatatctaatttgtttcttcttt 252
Query: 56 gtacatgactgctcaacaagccatgaccaacaacaaccaagaacagccaacagcaaccaa 115
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 253 gtacatgactactcaacaagccatgaccaacaacaaccaagaacagccaacaacaaccaa 312
Query: 116 tcaacagccaacctagagggctctagaatttacataaccctctaaaaagcccccagaatt 175
|||||| ||||||||||||||||||| ||||||||||||| ||||||||| |||||||||
Sbjct: 313 tcaacaaccaacctagagggctctagcatttacataacccactaaaaagctcccagaatt 372
Query: 176 ctaagcatcacacaatcacagaaactacctgcagttggcaaaatcaggcccttgctagag 235
|||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| ||
Sbjct: 373 ctaagcatcacacaatcaaagaaagtacctgcagttggcaaaatcaggcccctgctatag 432
Query: 236 catgaggtaaattatagtcagctgctgtggacgatctgaggtagccccatgtcccacacc 295
||||||| |||| |||||||||| ||||||||||||||||| | ||||| |||||||||
Sbjct: 433 catgaggcaaatcatagtcagctactgtggacgatctgaggcaaccccacatcccacacc 492
Query: 296 tgagataaagaagaaaacatattcttttaatatttctgtgtatt-tttttaaaa----aa 350
||| |||||||||||||||||||||| ||||| ||||||||||| ||||||||| ||
Sbjct: 493 tgatataaagaagaaaacatattcttataatagttctgtgtattctttttaaaagaaaaa 552
Query: 351 aggaaccaaaattctcactacaggaaaaaaaaacagaaaaaac--aaagcataacattca 408
|| |||||||||||||||||||||||||| | | ||||| |||||||| ||||||
Sbjct: 553 agaaaccaaaattctcactacaggaaaaa----cccataaaacccaaagcataccattca 608
Query: 409 cctcccacatagtcaaaggcttgccagccccagagacctgataccaggtgcagaaattct 468
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 cctcccacgtagtcaaaggcttgccagccccagagacctgataccaggtgcagaaattct 668
Query: 469 gagatgggcaatgttactgaaaaatcatcctgcaacttccagaaacatccctggcatgag 528
|||||||||| ||| ||||||||||||||||| | | |||||||||||| ||||||||||
Sbjct: 669 gagatgggcagtgtgactgaaaaatcatcctggatcatccagaaacatctctggcatgag 728
Query: 529 aaatgttatctcttctcctgggatt 553
|||||||||||||||||||||||||
Sbjct: 729 aaatgttatctcttctcctgggatt 753
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space: 512049
Effective search space used: 512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no422_j18.g1 MSMg01no422_j18.g1 CHROMAT_FILE:
MSMg01no422_j18.g1 PHD_FILE: MSMg01no422_j18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:05 2005
(485 letters)
>mm_chr8_19445498_19446381
Length = 884
Score = 837 bits (433), Expect = 0.0
Identities = 472/485 (97%), Gaps = 1/485 (0%)
Strand = Plus / Plus
Query: 1 agcagaagagaggacaaactgtgagcacacagaacccttatgcaacaagtattttcattt 60
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 201 agcagaagagaggacaaactgtgagcacacagaacccttatgcaacaagtgtttgcattt 260
Query: 61 aatcaagaaactttaatttggtttaagttttgtccatcttcatggaggaaaaaattctgg 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatcaagaaagtttaatttggtttaagttttgtccatcttcatggaggaaaaaattctgg 320
Query: 121 tgttttctttggtttgcaggatctttgtcttcttctctattatcacttgcagcatttgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgttttctttggtttgcaggatctttgtcttcttctctattatcacttgcagcatttgaa 380
Query: 181 aggagatccacaagttccaatcttatgcctaaggccaatgcaccgatactggcatatgcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggagatccacaagttccaatcttatgcctaaggccaatgcaccgatactggcatatgcc 440
Query: 241 tccgtttcgaatgcaagttactggttcattgattttttggctaaaagctgaaaaataatt 300
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 tccgtttcgaatgtaagttactggatcattgattttttggctaaaagctgaaaaataatt 500
Query: 301 aagaaaaaccacacattagaattaaacatgccaggtcagaaatacatactaatgtgtttt 360
|||||||||||||| |||||||||||||||| ||||||||||||||||| || |||||||
Sbjct: 501 aagaaaaaccacacgttagaattaaacatgcgaggtcagaaatacataccaacgtgtttt 560
Query: 361 tataatgaatagaacctagcaggatcttccccccaaacagggatgtctgttttagcagga 420
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 561 tataataaatagaacctagcaggctcttccccccaaacagggatgtctgttttagcagga 620
Query: 421 ctgaatccaattcttgatagagaaaggcactgttgcagtgtaaaagagtgatggttttcc 480
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct: 621 ctgaatccaattcttgatagagaaaggcactgttgcagtgtaaa-gagtgatggtttttc 679
Query: 481 tagga 485
|||||
Sbjct: 680 tagga 684
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 884
Length adjustment: 10
Effective length of query: 475
Effective length of database: 874
Effective search space: 415150
Effective search space used: 415150
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
