BAC Information

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BAC

Clone NameMSMg01-422M21
Chromosome8 (Build37)
Map Location 74,580,927 - 74,581,372
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042057, LOC665858, LOC384645, LOC100041583, EG621377, 2410004L22Rik, Myo9b, 2010315L10Rik, Ocel1, Nr2f6, Ushbp1, 5430437P03Rik, Ankrd41, Abhd8, Mrpl34, 1500034J01Rik, Tmem16h, Gtpbp3, Plvap, LOC665928, Bst2, 1110012M11Rik, BC033932, Txnl6, Slc27a1, Pgls, Bcnp1, Glt25d1, Unc13a, Jak3, Insl3, B3gnt3, LOC100042289, Fcho1, EG665991, LOC665996, LOC385024, LOC675190, Zfp709, LOC670453, Zfp617, BC049349, Cyp4f18, LOC666033
Downstream geneOlfr372, Olfr373, Olfr374, Tpm4, Rab8a, Hsh2d, Cib3, 2510049I19Rik, Ap1m1, LOC384840, LOC100042405, Klf2, Eps15l1, Calr3, LOC100042421, 1700030K09Rik, Cherp, Slc35e1, Crsp7, LOC100042439, 9130011J15Rik, Tmem38a, Nwd1, Sin3b, F2rl3, Large
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-422M21.T7 (MSMg01no422_m21.b1)MSMg01-422M21.TJ (MSMg01no422_m21.g1)
ACCAG517108AG517109
length724744
length of high quality
(start - end)		514 (66 - 579)446 (67 - 512)
definitionCHROMAT_FILE: MSMg01no422_m21.b1 PHD_FILE: MSMg01no422_m21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:20 2005CHROMAT_FILE: MSMg01no422_m21.g1 PHD_FILE: MSMg01no422_m21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:20 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGCGGAATTCCTG
CCTGGTTCCCGAATGTAGATGTGGCCTCTTCAGGTTCCATATCCCTAATG
TAGTGAGTCATAGCTAAATTCACCACCATTGATTCTTGGGTGCTTCCCTT
ATCCCAGGCCTCTGTCTCATCATGGAGATGCACCCTACCTCCTCACCCCA
GTCAGTTGCAGATTTCCATTCACTTTCATGGCCATCTAAGCCTGTCCTTC
CCCACCCATGATCCTGAAACCCCCATTCCCCTCCCCATGCTGCTTCCTCC
CAGTTTCCTCCTTCTGTTTTTCTCTTATGACTATTTTTTCCCCCTTCTAA
GTGAGATTCAAGCTTTCTCACTTGGACCTTCCTTCTTGTTTAGCTTCTTT
GGGTCTGTGTATCTGATTTTTATGGCTGATATCCACTTATAAGTGAGTAT
ATACCATGCATGTCCTTTTGGGACCGGGTTACCTCACTCGGGATGATAGT
CTCAAGTTCTATCCATTTGCCTGCAAAATTCATGATGTCTTTGTTTTTTG
GGTTTTTTTTTTTTTTTGGTTTTGGGTTTTTTTGNNTTAANNNTTNAATA
TATTAATAATATTATATATTTTATTTAATCATTTTACTTAACTACTTTTT
TTTTTTTTTTTTTTCATTATCATTCCAACATTTAATATATTTTATTTTTC
AACTATATTTTACACTTTTTTTTG

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTACCCTGGTGTTCTATTTCTGATATCTCTCAGGC
AAGTGCAACCAGCCAGCATCTACAGTTGAAGTCTGTGGTTAAGCTAGAGA
GCATAGGACAGCTCTGGTGAAAGATCAGAGCACACAGCTCCCCAGACACC
CTGGTGCAGGTATGGGACTTTGAAGAGGTCAAGATGACACACAAGGATAA
AGGTCCATCAAGAAATGTCTGGGACTGTGAAGAAAGACTTTTTCCATATC
CTCGGCAGAGGGATCTGATTATCAAGAACAGTAAGGAATGGATATTTGGG
ATGGACTGTTTCTGGGTGTGTTTGCAGGGAGACACAATATCTGACTGTTA
GGCTTCTTTTGAGTGTGTGTATCTGTATGTGTATGTACATAGGTATGTAT
GTGTGTATGCATGTGTGTGTTTGTGTGTGCATATATTTGTACATATGTAT
GGGGTTTTCTGTGTATGTATATGTGAGTATGTTTGAATAATTGTTGATTT
TTATTATATTTTATTTTTATTATTATGATTGTTTTGTTTTATTTTTTAAT
TTTGTGATTAATTACTTACTATTTTGTTTTGTTTTTGTATTATGTTATTA
ATTTTGTTTTTTTTTCTTTCACCCACTCTCTTCTCTCTATATTTCTTTGC
TTTCGTGTTCGGCTATCTCATTTTATTCATCTTTCTCCACTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no422_m21.g1 MSMg01no422_m21.g1 CHROMAT_FILE:
MSMg01no422_m21.g1 PHD_FILE: MSMg01no422_m21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:20 2005
         (446 letters)



>mm_chr8_74580826_74581671
          Length = 846

 Score =  847 bits (438), Expect = 0.0
 Identities = 444/446 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taccctggtgttctatttctgatatctctcaggcaagtgcaaccagccagcatctacagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 taccctggtgttctatttctgatatctctcaggcaagtgcaaccagccagcatctacagt 488

                                                                       
Query: 61  tgaagtctgtggttaagctagagagcataggacagctctggtgaaagatcagagcacaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 tgaagtctgtggttaagctagagagcataggacagctctggtgaaagatcagagcacaca 428

                                                                       
Query: 121 gctccccagacaccctggtgcaggtatgggactttgaagaggtcaagatgacacacaagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gctccccagacaccctggtgcaggtatgggactttgaagaggtcaagatgacacacaagg 368

                                                                       
Query: 181 ataaaggtccatcaagaaatgtctgggactgtgaagaaagactttttccatatcctcggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ataaaggtccatcaagaaatgtctgggactgtgaagaaagactttttccatatcctcggc 308

                                                                       
Query: 241 agagggatctgattatcaagaacagtaaggaatggatatttgggatggactgtttctggg 300
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 agagggatctgaaaatcaagaacagtaaggaatggatatttgggatggactgtttctggg 248

                                                                       
Query: 301 tgtgtttgcagggagacacaatatctgactgttaggcttcttttgagtgtgtgtatctgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tgtgtttgcagggagacacaatatctgactgttaggcttcttttgagtgtgtgtatctgt 188

                                                                       
Query: 361 atgtgtatgtacataggtatgtatgtgtgtatgcatgtgtgtgtttgtgtgtgcatatat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 atgtgtatgtacataggtatgtatgtgtgtatgcatgtgtgtgtttgtgtgtgcatatat 128

                                     
Query: 421 ttgtacatatgtatggggttttctgt 446
           ||||||||||||||||||||||||||
Sbjct: 127 ttgtacatatgtatggggttttctgt 102


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 846
Length adjustment: 10
Effective length of query: 436
Effective length of database: 836
Effective search space:   364496
Effective search space used:   364496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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