BAC Information

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BAC

Clone NameMSMg01-422O10
Chromosome8 (Build37)
Map Location 36,147,710 - 36,148,244
singlet/doubletsinglet
Overlap genenone
Upstream geneDctn6, LOC100042777, Mboat4, Leprotl1, LOC666694, Tmem66, LOC619780, LOC666718, EG234159, LOC666746, Dusp4, LOC675578, Tnks, LOC666792
Downstream geneLOC666797, LOC666804, Ppp1r3b, Thex1, Mfhas1, LOC100041572, Gm501, Cldn23, LOC671641
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-422O10.T7 (MSMg01no422_o10.b1)MSMg01-422O10.TJ (MSMg01no422_o10.g1)
ACCAG517182AG517183
length722720
length of high quality
(start - end)
535 (65 - 599)241 (66 - 306)
definitionCHROMAT_FILE: MSMg01no422_o10.b1 PHD_FILE: MSMg01no422_o10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:27 2005CHROMAT_FILE: MSMg01no422_o10.g1 PHD_FILE: MSMg01no422_o10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGCGGCCGCTAAACGACTCCTATTTCAAGAAGAGGGGCGGAATTCTCACT
GCTTCCCCTGAAGTCTGTCTGTATCTGCATCTGTTGGAGAAGATGCCACC
ATGATTCCGTGGCTGTGATTTCCCTCCTGGACAATTTTATTGGGTTTAGA
GTTGTAAACTGCTGGGCACATGTCTGGGAGGGCATTTTTAGGGAGGCTTA
GCTGAGGAGAGATACCCACCCTGGATATGGCGCCATTCCATGTGCTGAAT
AAAAATGGGAAAGAAGGGACAGCCAGCTGAGTCCCAGAATTCATTTCTCT
CAGCTTCCTGATTGTGTATGCAATGTGACCAGCTGCCTCAGGCTCCTACC
GCCGTGCCTTCCCAGTTACAATGGACTGTACCCTTAAACTAAGGTGTGAC
CAGGTAATTTGTCATAGCAACAAGAGAAATAATTAATACATCAGGCAAGG
AGATGTTTAGCAGGGATTTTTAGAGAAGGGGAAATTGCAGAATTTGTTCA
GCTGAGATCAGTTGCCTTCGACATGAAGAGGCACCATACTGAGGATGCTG
CTCCTCAATCCATGAAGACACTATCTTCCACCTAGCTATTGACTTAGACA
TCGTGGTAAATATGGTGAATCTTACTTACCGACTGCTCGATTTTTTCCTG
TGATTCCTTTACCTCCAGCATTCCTTAGAACATGCAAATTATTGTCCTGG
CTAGGAAAGTTTCGCATCACCT
TGGGAGGCCTGGAGGNCGCCTGGTTTCATACTTGAGGNGAACTATAGAAG
GTTACAAAAAATTCGTTGCCTGGGCCCCTGTCTTATTTAGAATCTTACCG
CTGTGATCTGACACCATGACCAAGGCAACTCTAAGAACAACATTTCATTG
GGGCTGGCTGACAGGTTCAGAAGTTCAGTCCATTATCATCAAGGCAGGAA
CATGGCAGCATCCAGGCAGGTGTGGTACAGAAACTTAGAGTTCTTCATCT
TCATCTGAAGGCTGCCGGCAGAATACGGGCTTCCAGGCATGTAGGGTGAG
GGTCTTAATGCCTCATCCACAGTGACACACCTATGTCACAACAGGGCCAC
ATCTAATACTGCCACTCCTTGGGCTGAGCATGTACAAACCATCACAGCCG
CTCTATTCAGACTTATTGTTCTGAGGTCAGTGAATCCTCCCTGTGATAGA
TCAGTTTGGCAATCTGAACAATTTTTTAAAAGATCTCACATCATTACGGT
AAGGGCACATGTGATAGATAACCTTGGTTATCCACTTGACTATACCTGGA
ATCGTCAAAAACCCAACCTGCTAGGCACCCCTGTGAGGGAATTTCCTAGA
TCAGATTCCTTGAAACACAAAGATCCATCCTAAATCCCGGTCTTATTTTT
CTTATGGTAGCTCACCCTGTAAGGACTCCGAAGAAAGAAACTTTGTAGCC
CGCTTTACAACCACTCTTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no422_o10.b1 MSMg01no422_o10.b1 CHROMAT_FILE:
MSMg01no422_o10.b1 PHD_FILE: MSMg01no422_o10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:27 2005
         (535 letters)



>mm_chr8_36147510_36148444
          Length = 935

 Score = 1011 bits (523), Expect = 0.0
 Identities = 532/535 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgtctgtatctgcatctgttggagaagatgccaccatgattccgtggctgtgatttccc 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 ctgtctgtatctgcatctgttggagaagatgccaccatgattccgtgggtgtgatttccc 260

                                                                       
Query: 61  tcctggacaattttattgggtttagagttgtaaactgctgggcacatgtctgggagggca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcctggacaattttattgggtttagagttgtaaactgctgggcacatgtctgggagggca 320

                                                                       
Query: 121 tttttagggaggcttagctgaggagagatacccaccctggatatggcgccattccatgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttttagggaggcttagctgaggagagatacccaccctggatatggcgccattccatgtg 380

                                                                       
Query: 181 ctgaataaaaatgggaaagaagggacagccagctgagtcccagaattcatttctctcagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgaataaaaatgggaaagaagggacagccagctgagtcccagaattcatttctctcagc 440

                                                                       
Query: 241 ttcctgattgtgtatgcaatgtgaccagctgcctcaggctcctaccgccgtgccttccca 300
           ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcctgactgtggatgcaatgtgaccagctgcctcaggctcctaccgccgtgccttccca 500

                                                                       
Query: 301 gttacaatggactgtacccttaaactaaggtgtgaccaggtaatttgtcatagcaacaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gttacaatggactgtacccttaaactaaggtgtgaccaggtaatttgtcatagcaacaag 560

                                                                       
Query: 361 agaaataattaatacatcaggcaaggagatgtttagcagggatttttagagaaggggaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agaaataattaatacatcaggcaaggagatgtttagcagggatttttagagaaggggaaa 620

                                                                       
Query: 421 ttgcagaatttgttcagctgagatcagttgccttcgacatgaagaggcaccatactgagg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttgcagaatttgttcagctgagatcagttgccttcgacatgaagaggcaccatactgagg 680

                                                                  
Query: 481 atgctgctcctcaatccatgaagacactatcttccacctagctattgacttagac 535
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atgctgctcctcaatccatgaagacactatcttccacctagctattgacttagac 735


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space:   485625
Effective search space used:   485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)