BAC Information

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BAC

Clone NameMSMg01-423I11
Chromosome8 (Build37)
Map Location 99,272,502 - 99,272,741
singlet/doubletsinglet
Overlap genenone
Upstream geneCnot1, LOC100041953, LOC100041088, BC031853, LOC100041972, Got2, LOC667445
Downstream geneLOC333331, LOC546090, LOC636859
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423I11.T7 (MSMg01no423_i11.b1)MSMg01-423I11.TJ (MSMg01no423_i11.g1)
ACCAG517663AG517664
length745732
length of high quality
(start - end)
245 (59 - 303)240 (66 - 305)
definitionCHROMAT_FILE: MSMg01no423_i11.b1 PHD_FILE: MSMg01no423_i11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:14 2005CHROMAT_FILE: MSMg01no423_i11.g1 PHD_FILE: MSMg01no423_i11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGCCGCTAAACGACTCAAATGCGGATGAGGATCCGCGGAATTCTTTGTT
TCTCTCTGAGCCCCATTTTTAATGGGGTTATTTGATTTTTGGGTTCCACA
TTCTTGACTTCTTTATATATATTGGATATTATTCCCCTATCTGATCTAGG
ATAGGGAAAGACCCTTTCCCATTCTATTGGTGGCCTTTTTGTCTTATTGA
AGGTGTCTTTTGCCTTGCAGAAGCTTTGCAGTTTTTTGAGGTCCCATTTG
TCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTATTCAGGAATTT
TCCTCCTTTTCCATATCTTCAAGGGCGTTCCCTACTTTCTCCTTAATAAC
TTTCAGTGTCTCTGGATCTATGCGGAGTTCCTTAATCTACTTAGATTTTG
ACCTTACTATAATGAGATAGGAATGGATTAATTCGCACTCTTCTACCTCG
ACAAAACCTGTTGCGTCAGACTCATTCTGTGAAAATGTTGTCTCTTTTCC
AATGGACGGGTTTTGCTCCCTCGTCAAAGTTTAAGGTGACCTTGGTGTGT
GGGTTTCATCTTTGGGTCTTCTTTTTCTATTCCATCGTTCTTATTTTCAC
GTCTCCATCTCCTTATCCCCGGAGCTATCATCCCTTTTTTTTTCTGTTAC
AACACATCCCAGTTTCCCCTATGCCTGTTTCCCATCCACACGTACTATTT
ATAATCTTCCCTACACATCTTTTTGCTCCATTCCTCACGCCCCTN
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAACCAACATGATAAGCATATGGTAATTAAAATGCT
TTTTTAGAGTGGGAGATTTAAACAAATGGCATCAATAACAATTGTGTCCT
ATTTTGTTTTCAGTTTTATATCAAGGTCTGTGTCCTCTAGTCATTTATGA
GTTTTATATGCTGTTACTACTTTAATAGCATATATTTTTTAGAGCACCTA
TCTGTTGACAGGGGATTTCTGGCAAGAAAGTAAGTTATTTCCTATTTGTT
GAAGTTTATTATAGTGAATACTGCTATCAGTGCTGTGGGAGAGTTTTATC
TCCTTTAAAGAAAACATGGTGTTGGATTTATCAGACTCCAGTGCCTCAGG
TTAATAAAAAAATAAGTAACTGACCCAGTATATATAGGTTAATGTGGATA
GCATTACATAAGGATGACTACTTAAAATTTGATAGGTCATTTATATTCTG
AATATTCTGAGTGTAATCTAATAATAGGAAATGAGTTTGAAAGGTTCACA
TTTTTATTATAGGGTTGCTCACCCTGACACATATTGATTCCAACTTCATC
ACCCTGGCCTGGTCTTTTGCGTAACTGCCCCTCTGCCGTTATCTCTCAAC
TTTCTGCCTTACTCACTTTACTGAATATTCTCTTTCTTACCTGCTCACTA
CAAAACCTTATTATTTCCCCTCCCTTTCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_i11.g1 MSMg01no423_i11.g1 CHROMAT_FILE:
MSMg01no423_i11.g1 PHD_FILE: MSMg01no423_i11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:14 2005
         (240 letters)



>mm_chr8_99272302_99272941
          Length = 640

 Score =  456 bits (236), Expect = e-133
 Identities = 239/240 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaccaacatgataagcatatggtaattaaaatgcttttttagagtgggagatttaaacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aaccaacatgataagcatatggtaattaaaatgcttttttagagtgggagatttaaacaa 381

                                                                       
Query: 61  atggcatcaataacaattgtgtcctattttgttttcagttttatatcaaggtctgtgtcc 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 atggcatcaatagcaattgtgtcctattttgttttcagttttatatcaaggtctgtgtcc 321

                                                                       
Query: 121 tctagtcatttatgagttttatatgctgttactactttaatagcatatattttttagagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tctagtcatttatgagttttatatgctgttactactttaatagcatatattttttagagc 261

                                                                       
Query: 181 acctatctgttgacaggggatttctggcaagaaagtaagttatttcctatttgttgaagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 acctatctgttgacaggggatttctggcaagaaagtaagttatttcctatttgttgaagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)