Query= MSMg01no423_j21.b1 MSMg01no423_j21.b1 CHROMAT_FILE:
MSMg01no423_j21.b1 PHD_FILE: MSMg01no423_j21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:20 2005
(450 letters)
>mm_chr8_51838411_51839260
Length = 850
Score = 739 bits (382), Expect = 0.0
Identities = 438/474 (92%), Gaps = 28/474 (5%)
Strand = Plus / Plus
Query: 5 gaattcactgtgttgcatgcttttctgtccatttaaagcatcaattgttgccttggaaac 64
|||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 205 gaattcactgtggggaatgcttttctgtccatttaaagcatcagttgttgccttggaaac 264
Query: 65 agggcatatttatgaccagttctaagacaatttttttaacaaaatatttctctaaaacac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agggcatatttatgaccagttctaagacaatttttttaacaaaatatttctctaaaacac 324
Query: 125 atgatttaatttgaccatgtcatttaattcttatgtttctgtaattaggaataaattcta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 325 atgatttaatttgaccatgtcatttaattcttatgtttctgtaattaggaataaatttta 384
Query: 185 attaattttcttaacagtcattctttaagtcattctgaaataatttttgattttctcttt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 attaattttcttaacagtcattctttaagtcattctgaaataatttttgattttctcttt 444
Query: 245 ctttctttcttt---------ttttttttttttttttttttttttttgaaacagggtttc 295
|||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct: 445 ctttctttctttctttcttttttttttttttttttttttttttttttgagacagggtttc 504
Query: 296 tctg-------------------gaactcactctgtaaaccaggctggccttgaactaaa 336
|||| |||||||||||||| |||||||||||||||||||||
Sbjct: 505 tctgaattgccctggctgtcctggaactcactctgtagaccaggctggccttgaactaag 564
Query: 337 aaatctgcctgcctctacctcctgcgtgctgggattcaaggcatgcaccaccacgcctgg 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaatctgcctgcctctacctcctgcgtgctgggattcaaggcatgcaccaccacgcctgg 624
Query: 397 ctattttaaatttcttgagctttgtgcatggacaataaataagtcacaatctct 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctattttaaatttcttgagctttgtgcatggacaataaataagtcacaatctct 678
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 65
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space: 369600
Effective search space used: 369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no423_j21.g1 MSMg01no423_j21.g1 CHROMAT_FILE:
MSMg01no423_j21.g1 PHD_FILE: MSMg01no423_j21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:20 2005
(559 letters)
>mm_chr8_52031406_52032360
Length = 955
Score = 1038 bits (537), Expect = 0.0
Identities = 552/559 (98%), Gaps = 4/559 (0%)
Strand = Plus / Minus
Query: 1 tttcttatttcaaaagcactctgtgtacgtctataatcttcaaaattcgttacttctgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 tttcttatttcaaaagcactctgtgtacgtctataatcttcaaaattcgttacttctgaa 696
Query: 61 gtatttatattaccctccaagaaaatattaatttgtttatttgtgaaatgaaatattatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 gtatttatattaccctccaagaaaatattaatttgtttatttgtgaaatgaaatattatg 636
Query: 121 atgtcaatagaataaaagtaagtatatggagggcgaggtcccagaatttcttttaagata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 atgtcaatagaataaaagtaagtatatggagggcgaggtcccagaatttcttttaagata 576
Query: 181 gtcagtagaaaaaagcaaaaatgaatatgttgagtatcttaaagtgtttgctatctgatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 gtcagtagaaaaaagcaaaaatgaatatgttgagtatcttaaagtgtttgctatctgatg 516
Query: 241 agatgtgtttttctttagaagtcagtgtcaatgaaaaaatatggttattaattaatgatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 agatgtgtttttctttagaagtcagtgtcaatgaaaaaatatggttattaattaatgatt 456
Query: 301 tcaattctctcagttgcattagatattctatgccaaaaactatttgcattgttctactta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tcaattctctcagttgcattagatattctatgccaaaaactatttgcattgttctactta 396
Query: 361 tctctttaattgtggtgtaattgacacaattatcaactatacaattttaagtctagattt 420
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tctctttcattgtggtgtaattgacacaattatcaactatacaattttaagtctagattt 336
Query: 421 ttacaagttggtaaaacatgatatatatatatattcatatctttactttgctgaagctaa 480
||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 335 ttacaagttggtataacatgatatatatat----tcatatctttactttgctgaagctaa 280
Query: 481 tgattatacatttcaagcttaaaatgtcttctgattcccacttctccatgttccctattg 540
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 tgattatacattttaagcttaaaatgtcttctgattcccacttctccatgttccctattg 220
Query: 541 ccctgaccaacctttctgt 559
|||||||||||||||||||
Sbjct: 219 ccctgaccaacctttctgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 955
Length adjustment: 10
Effective length of query: 549
Effective length of database: 945
Effective search space: 518805
Effective search space used: 518805
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
