Query= MSMg01no423_p15.b1 MSMg01no423_p15.b1 CHROMAT_FILE:
MSMg01no423_p15.b1 PHD_FILE: MSMg01no423_p15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:48 2005
(521 letters)
>mm_chr8_63996599_63997518
Length = 920
Score = 837 bits (433), Expect = 0.0
Identities = 500/527 (94%), Gaps = 14/527 (2%)
Strand = Plus / Minus
Query: 5 gaattcactatatctatataacctggatagagaaaatatggaagtcagcaggaatggtgg 64
|||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 gaattcactataacgatatgacctggatagagaaaatatggaagtcagcaggaatggtgg 647
Query: 65 cacaagtccgtaatcctggcactgcg-taggcagaaatgggaggatcacaaggtcaacag 123
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 646 cacaagtccgtaatcctggcactgcgttaggcagaaatgggaggatcacaaggtcaacag 587
Query: 124 cattcttggctacgtaataagttcgacaccagccttggccacaagaaggaaggaaagaaa 183
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 586 cattcttggctacgtaataa-ttcgacaccagcctaggccacaagaaggaaggaaagaaa 528
Query: 184 ggacacaggtgtccagccatatgaacagacatgccacactgctacctacttcgaaggaaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 ggacacaggtgtccagccatatgaacagacatgccacactgctacctacttcgaaggaaa 468
Query: 244 atttccgtgtatttaagatttgaaagaggaaaaaagtcgtaataagtcaaacaccgaacg 303
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
Sbjct: 467 atttccgtgtatttaagatttgaaagagg-aaaaagtcataataagtcaaacaccgaatg 409
Query: 304 gagcccctcccgccacagcccctgcagtacattcgcagg-----tc--tcactcagctgt 356
|||||||||||||||||||||||||||||||||| |||| || ||||||||||||
Sbjct: 408 gagcccctcccgccacagcccctgcagtacattcacaggctctatccttcactcagctgt 349
Query: 357 aagcct--tcgcagtgggaacccttcatgatagataacaagtgtgctcttctctctgcgt 414
|||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 348 aagcctgctcg--gtgggaacgcttcatgatagataacaagtgtgctcttctctctgcgt 291
Query: 415 ctgcacatggatcaagagcaccgactgctcagactgtggccgacctgtggtgaccttcag 474
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||
Sbjct: 290 ctgcacatggatcaagaggaccaactgctcagactgtggccgacctgtggtgacctttag 231
Query: 475 ttcctgacaccatattgtgctattctctgctctctgactcactggga 521
||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 230 ttcctgataccatattgtgctatgctctgctctctgactcactggga 184
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 920
Length adjustment: 10
Effective length of query: 511
Effective length of database: 910
Effective search space: 465010
Effective search space used: 465010
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no423_p15.g1 MSMg01no423_p15.g1 CHROMAT_FILE:
MSMg01no423_p15.g1 PHD_FILE: MSMg01no423_p15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:48 2005
(522 letters)
>mm_chr8_63812691_63813608
Length = 918
Score = 897 bits (464), Expect = 0.0
Identities = 506/522 (96%), Gaps = 4/522 (0%)
Strand = Plus / Plus
Query: 1 tcgaaggcaccatgtcaggttgtgtatcaaggactgattgcagtcagaaggaagacttca 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcgaaggcaccatgtcagggtgtgtatcaaggactgattgcagtcagaaggaagacttca 260
Query: 61 gtgccctgtttctctttgttcaaatggtccagttgtctgaagactagataagattttagc 120
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 gtgccccgtttctctttgttcaaatggtccagttgtctgaagactagatacgattttagc 320
Query: 121 aacacaattagttcccagctgcctcacttggttttcacagtcattttacaaggatggcgt 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 aacacaattagttcccagctgcctcacttggttttcacagtcattttacaaggatggcat 380
Query: 181 gattcacaaaaaccagaaagtttggttgaagatgatgttaaccatggaatctggggcatt 240
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 gattctcaaaaaccagaaagtttggttgaagatgatgctaaccatggaatctggggcatt 440
Query: 241 tctcagtcattgttgtgcgttctgggctagtattgaaccctaagttgcttctttttttta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctcagtcattgttgtgcgttctgggctagtattgaaccctaagttgcttctttttttta 500
Query: 301 ttgaaatgttgaatattttaattgcactgttgtaatacactgtttagaaaaaagttgctt 360
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 501 ttgaaatgttgaatattttaattgcactgttgtaacacactgttcagaaaaaagttgctt 560
Query: 361 acaaatattactgctcactgacaaagctattggtcagccaataactctagtggggatgta 420
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 561 acaaatattactgctcactgacaaagctattggtcagccaataactctaatgggaatgta 620
Query: 421 taataagaccaatgttctcatgccagtaacacaatatattttctgtaagctgtaatgtgt 480
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 621 taataagaccaatgttctcatgccagtaacacaatatcttttctgtaagctgtaatgtgt 680
Query: 481 agcttttgctacccgccccccccccccatgctctaggaatgg 522
|||||||||||||| |||||||| |||||||||||||||
Sbjct: 681 agcttttgctaccc----ccccccccaatgctctaggaatgg 718
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 918
Length adjustment: 10
Effective length of query: 512
Effective length of database: 908
Effective search space: 464896
Effective search space used: 464896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
