BAC Information

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BAC

Clone NameMSMg01-424B15
Chromosome8 (Build37)
Map Location 23,122,232 - 23,122,717
singlet/doubletsinglet
Overlap geneAtp7b
Upstream geneDefcr21, LOC100038926, Defcr23, LOC100041688, Defcr25, LOC626605, LOC634825, LOC100040619, LOC100038927, Defcr22, Defcr-rs7, LOC100041759, LOC672740, EG665969, LOC100041787, Defcr3, Defcr5, LOC100041811, Defcr-rs1, LOC100040668, LOC100041843, LOC100040678, EG665927, LOC100040693, Defcr20, LOC100041890, LOC100041895, EG626682, LOC100040706, EG665956, LOC635093, Defcr26, Defcr17, LOC100041952, Defcr-ps1, AY761184, LOC100040729, Defcr24, LOC100040739, Defb1, Defb50, Defb2, Defb10, Defb9, Defb11, Defb15, Defb35, Defb13, C86695, Ccdc70
Downstream geneAlg11, Nek5, Nek3, Ckap2, Vps36, Rpl30-ps2, Thsd1, Tpte, Slc25a15, LOC547006, Mrps31, AI316807, Slc20a2, LOC100040803, Vdac3, Dkk4, Polb, Ikbkb, Plat, Ap3m2, Myst3, LOC100042253
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-424B15.T7 (MSMg01no424_b15.b1)MSMg01-424B15.TJ (MSMg01no424_b15.g1)
ACCAG518101AG518102
length745759
length of high quality
(start - end)		548 (66 - 613)243 (76 - 318)
definitionCHROMAT_FILE: MSMg01no424_b15.b1 PHD_FILE: MSMg01no424_b15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:57 2005CHROMAT_FILE: MSMg01no424_b15.g1 PHD_FILE: MSMg01no424_b15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACATTTTCCCACATACTTTAAATCATCTCTAGAATAATTATTATAC
ATTTGCAATGCAAATGGTATGTAAATGGGTTTTATACTATACGGTTTAGA
GATTTAGAGAACAATGATGCAAAAATATACATATATTGTATACACAGACA
GGTGACCTCTGCACCTCCTCCCCCCACAATGTATGTGTGTGTGAGTGTGT
GTGTTGCTGGGGATGGGACCCAGGGCCTCTTACATGGTAGGCAAGTGCTG
TACCACCAAGCTATATCCCAAACCCATCCCTGAGTATTTTTTTTTTATGC
AAGGTTGGTTATGTCTGCTAATCTAGAACTCTTAGATACATAGGGCTAGC
AGTAAAAGGTCCAATAGTCAGTCTAGAACCCAGTTTAATCCCAGACGAGG
AGGATGGTATCTGACTGTCTTCTGTTGCAGAGAGGAGCAGGTGCCCATGG
AGCTGGTGCAGCGAGGCGACGTCATCAAGGTTGTCCCTGGGGGCAAGTTC
CCAGTGGATGGGAAAGTCCTCGAAGGCAATACCATGGCTGATGAGTCCCT
CATCACAGGTTAGGTGGCTGGGTTTAGGGTCCCTTTGGTGGGGGTCATGG
TAGCCATTGGTCCATATGATGTTGAGAAGGCTGAGTGAGTGATTGGCTTC
TGTCTCTTCCCTAAGAAAGGGCATGCCTGTCTTCAATAAATCCGG

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTCCTAGTCACTGCCCATCTCAGG
GTGTAGTAATGGGGTGATGGGTGAGCAACGAATCAGGAGCTGTCATGCCA
CATCAGGTGCTGAAACGTCACACTGCGGGCTATATAAGCAGCGCCATTTT
CTGGGTTTTGGGTCTTCCTCCTGAGAAGTAAGCAATAAAGCTTTTTGCCG
CATAAGATTCCGGTTGTCCTGAGTGTGTTCTTTCCAGCGGGGACAAAAGC
TCGGGATAAACCATCATGTTGTTTTTAAAAGGAAAAGGTTTTACTCTGAT
CTGCCCAACGAGTGATGGAGGATTGACAATCAGACCAAGGCAGGATCAGC
CCTTCTTCTTCCAAGTTACAAGGGGGGTTATTCCTGGCTCGTGGCGACGC
TCTTCGTTTGAATATTTACGTGTTACAAATGTTCCCCTATTCCCTATTGT
CTGTTGTCCAATCTTCCTATTTCTTCCGTTAATCTCTGTCTTTTAATTTC
CTCGCTCTGATTTCCCATTTTTTTCCTCTTTGTTCCGTTCCTTTCCCCTT
ATTTTTTCAACTTCCTTCTGCCTTCCCCTTCTTACTTTTTCTCCTTTCTT
TTTTACCCTCTTCTTTCTTTTTTTTCTTTTCATATTTTCCTTCCCCTTTC
ACCCTTTTTTTCTTCATTTTTCACTCTTCCCCCTTTTTTCCCTCCCTCTT
TTTTCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no424_b15.b1 MSMg01no424_b15.b1 CHROMAT_FILE:
MSMg01no424_b15.b1 PHD_FILE: MSMg01no424_b15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:57 2005
         (548 letters)



>mm_chr8_23121772_23122717
          Length = 946

 Score =  901 bits (466), Expect = 0.0
 Identities = 482/488 (98%), Gaps = 2/488 (0%)
 Strand = Plus / Minus

                                                                       
Query: 61  tgggttttatactatacggtttagagatttagagaacaatgatgcaaaaatatacatata 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 946 tgggttttatactgtacggtttagagatttagagaacaatgatgcaaaaatatacatata 887

                                                                       
Query: 121 ttgtatacacagacaggtgacctctgcacctcctccccccacaatgtatgtgtgtgtgag 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 ttgtatacatagacaggtgacctctgcacctcctccccccacaatgtatgtgtgtgtgag 827

                                                                       
Query: 181 tgtgtgtgttgctggggatgggacccagggcctcttacatggtaggcaagtgctgtacca 240
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 826 tgtgtgtgttgctggggatgggactcagggcctcttacatggtaggcaagtgctgtacca 767

                                                                       
Query: 241 ccaagctatatcccaaacccatccctgagtattttttttttatgcaaggttggttatgtc 300
           |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 766 ccaagctatatcccaaacccatccctgagta--ttttttttatgcaaggttggttatgtc 709

                                                                       
Query: 301 tgctaatctagaactcttagatacatagggctagcagtaaaaggtccaatagtcagtcta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 tgctaatctagaactcttagatacatagggctagcagtaaaaggtccaatagtcagtcta 649

                                                                       
Query: 361 gaacccagtttaatcccagacgaggaggatggtatctgactgtcttctgttgcagagagg 420
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 gaacccagtctaatcccagacgaggaggatggtatctgactgtcttctgttgcagagagg 589

                                                                       
Query: 421 agcaggtgcccatggagctggtgcagcgaggcgacgtcatcaaggttgtccctgggggca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 agcaggtgcccatggagctggtgcagcgaggcgacgtcatcaaggttgtccctgggggca 529

                                                                       
Query: 481 agttcccagtggatgggaaagtcctcgaaggcaataccatggctgatgagtccctcatca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 agttcccagtggatgggaaagtcctcgaaggcaataccatggctgatgagtccctcatca 469

                   
Query: 541 caggttag 548
           ||||||||
Sbjct: 468 caggttag 461


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 946
Length adjustment: 10
Effective length of query: 538
Effective length of database: 936
Effective search space:   503568
Effective search space used:   503568
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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