This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
Previous ver.
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RIKEN MSM/Ms Mouse BAC clones & Library
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BAC Information
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BAC name
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Search Result
BAC
Clone Name
MSMg01-424E08
Chromosome
8 (Build37)
Map Location
54,492,794 - 54,493,364
singlet/doublet
singlet
Overlap gene
none
Upstream gene
LOC676688
Downstream gene
Aga
,
Neil3
,
LOC100040107
,
Vegfc
Link
Open Mouse BAC browser
Click to get alignment info.
name
LOC676688
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:676688
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins
pseudo
: _no_value
name
Aga
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:11593
MGI:104873
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Neil3
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:234258
MGI:2384588
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC100040107
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:100040107
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein
pseudo
: _no_value
name
Vegfc
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:22341
MGI:109124
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Aga
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:54292134
GeneID:11593
MGI:104873
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: aspartylglucosaminidase
transcript_id
: NM_001005847.1
name
Neil3
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:22122758
GeneID:234258
MGI:2384588
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: nei like 3 (E. coli)
transcript_id
: NM_146208.1
name
Vegfc
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:119672918
GeneID:22341
MGI:109124
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: vascular endothelial growth factor C
transcript_id
: NM_009506.2
name
Aga
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:54292135
CCDS:CCDS22304.1
GeneID:11593
MGI:104873
definition
EC_number
: 3.5.1.26
GO_component
: GO:0005764 - lysosome [Evidence IEA]
GO_function
: GO:0004067 - asparaginase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0003948 - N4-(beta-N-acetylglucosaminyl)-L-asparaginase activity [Evidence IEA]
GO_process
: GO:0006516 - glycoprotein catabolism [Evidence IEA]
codon_start
: 1
product
: aspartylglucosaminidase
protein_id
: NP_001005847.1
name
Neil3
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:22122759
CCDS:CCDS22305.1
GeneID:234258
MGI:2384588
definition
GO_component
: GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA]
GO_function
: GO:0003684 - damaged DNA binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO_process
: GO:0006284 - base-excision repair [Evidence IEA]; GO:0006974 - response to DNA damage stimulus [Evidence IEA]
codon_start
: 1
product
: putative DNA glycosylase
protein_id
: NP_666320.1
name
Vegfc
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:6678565
CCDS:CCDS22306.1
GeneID:22341
MGI:109124
definition
GO_component
: GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0008083 - growth factor activity [Evidence IEA]
GO_process
: GO:0001525 - angiogenesis [Evidence IEA]; GO:0030154 - cell differentiation [Evidence IEA]; GO:0008283 - cell proliferation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0016331 - morphogenesis of embryonic epithelium [Evidence IMP]; GO:0009887 - organ morphogenesis [Evidence IMP]; GO:0008284 - positive regulation of cell proliferation [Evidence IMP] [Evidence ISS]; GO:0002052 - positive regulation of neuroblast proliferation [Evidence ISS]; GO:0000074 - regulation of progression through cell cycle [Evidence IEA]
codon_start
: 1
product
: vascular endothelial growth factor C
protein_id
: NP_033532.1
name
LOC676688
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:676688
definition
number
: 1
pseudo
: _no_value
name
LOC676688
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:676688
definition
number
: 2
pseudo
: _no_value
name
LOC100040107
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:100040107
definition
number
: 4
pseudo
: _no_value
name
LOC100040107
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:100040107
definition
number
: 3
pseudo
: _no_value
name
LOC100040107
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:100040107
definition
number
: 2
pseudo
: _no_value
name
LOC100040107
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:100040107
definition
number
: 1
pseudo
: _no_value
clone name
MSMg01-057E01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-147D03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-520F21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-300E16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-419L21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-096N23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-288B13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-279G03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-377G03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-275I20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-464L07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-168M19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-510A15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-120P10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-050N10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-188D10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-056O10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-170O09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-183E08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-188L12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-048I11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-544H09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-135K24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-444N23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-403K22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-381N24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-348F24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-275I05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-150D14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-351N20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-145M10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-052F18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-514F15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-500P24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-195M13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-095B10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-060E09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-521P21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-523C19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-297A18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-506A24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-273M24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-280I08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-369C05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-483I14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-261H09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-304I13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-301P17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-108C01
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-154H17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-050I15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-498L06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-537K17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-260H18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-433B17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-232I13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-093F04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-266F06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-049J18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-415E09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-130N02
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-424E08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-433B17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-150N13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-163D04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-149I02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-379N24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-480G11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-493H14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-357I24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-414B04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-379O22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-381I19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-142B18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-163L22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-342L23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-275F18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-477P10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-435B19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-129O19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-408K05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-317M07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-178E13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-516P03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-484A23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-487K09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-433E21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-488C16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-162E04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-129G03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-178P13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-178A09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-057E03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-348H12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-089O12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-359E08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-390M23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-288F08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-103B01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-351B19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-294E24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-513E11
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-067P16
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-272D23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-223C16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-135J18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-001E11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-319F18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-013B06
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-004H20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-256E17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-323D02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-270O10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-150G23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-146B11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-023A05
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-313B08
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-103I08
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-150H22
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-118B07
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-184F07
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-180L06
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-173A06
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-165N21
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-217M02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-058A22
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-325B22
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-174H22
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-205D02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-095E21
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-021F04
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-278N19
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-122G01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-127K23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-072O10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-294A01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-068G15
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-246C24
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-189E16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-229K07
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-053E06
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-094J22
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-232M14
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-015D08
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-197J04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-149C02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-037N07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-134C24
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-168J20
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-027O24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-018D19
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-157H22
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-201J06
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-107B19
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-297C03
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-159G16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-277E04
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-105D14
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-105F01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-145H22
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-117N16
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-103J20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-319F13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-291N17
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-190A19
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-133P11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-321E16
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-166N04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-246G01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-167K20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-054G08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-095L02
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doublet
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unique
clone name
B6Ng01-335P01
singlet/doublet
doublet
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unique
clone name
B6Ng01-288D17
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clone name
B6Ng01-337F19
singlet/doublet
singlet
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unique
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B6Ng01-002L02
singlet/doublet
doublet
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unique
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B6Ng01-002M01
singlet/doublet
doublet
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unique
clone name
B6Ng01-316O19
singlet/doublet
singlet
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unique
clone name
B6Ng01-229K22
singlet/doublet
doublet
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unique
clone name
B6Ng01-285N17
singlet/doublet
doublet
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unique
clone name
B6Ng01-046J22
singlet/doublet
doublet
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unique
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B6Ng01-264L04
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B6Ng01-104G24
singlet/doublet
singlet
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B6Ng01-141C19
singlet/doublet
doublet
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B6Ng01-057L16
singlet/doublet
singlet
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unique
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B6Ng01-103I05
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singlet
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B6Ng01-335F09
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doublet
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B6Ng01-103I09
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B6Ng01-049M12
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B6Ng01-206A15
singlet/doublet
doublet
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unique
clone name
B6Ng01-348O04
singlet/doublet
doublet
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B6Ng01-055P17
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doublet
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B6Ng01-016K19
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doublet
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B6Ng01-339G09
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doublet
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B6Ng01-120M05
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B6Ng01-236D03
singlet/doublet
doublet
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B6Ng01-303O12
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doublet
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B6Ng01-297G07
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doublet
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B6Ng01-051M09
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B6Ng01-233N20
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doublet
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B6Ng01-064I04
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B6Ng01-097N10
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B6Ng01-274N08
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doublet
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B6Ng01-187E03
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B6Ng01-179H12
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doublet
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B6Ng01-321E20
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doublet
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B6Ng01-158A24
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B6Ng01-044P05
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B6Ng01-177D12
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B6Ng01-310I14
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B6Ng01-223C21
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B6Ng01-144I09
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B6Ng01-348B19
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B6Ng01-006O03
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B6Ng01-274L13
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doublet
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B6Ng01-304E03
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doublet
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B6Ng01-298J18
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B6Ng01-240H20
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doublet
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