BAC Information

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BAC

Clone NameMSMg01-424G06
Chromosome8 (Build37)
Map Location 4,709,866 - 4,710,399
singlet/doubletsinglet
Overlap genenone
Upstream geneClec4g, Cd209a, LOC664870, Cd209e, Cd209d, Cd209b, Cd209c, LOC664888, EG384770, EG664905, LOC664915, LOC664922, LOC631071, Cd209f, Cd209g, B130050I23Rik, BC068157, Lrrc8e, Map2k7, LOC100039590, Snapc2, Ctxn1, Timm44, Elavl1, Ccl25, LOC664977, Ppia-ps8_36.1, Lass4, Vmn2r-ps89, EG633533, BC003267, LOC665021, EG623133, EG665044, EG623223
Downstream geneLOC100040234, Shcbp1, EG622568, LOC669393, EG631359, LOC100039687, LOC436026, Slc10a2, LOC434275, LOC623409, LOC669429
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-424G06.T7 (MSMg01no424_g06.b1)MSMg01-424G06.TJ (MSMg01no424_g06.g1)
ACCAG518321AG518322
length735734
length of high quality
(start - end)
582 (46 - 627)534 (79 - 612)
definitionCHROMAT_FILE: MSMg01no424_g06.b1 PHD_FILE: MSMg01no424_g06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:20 2005CHROMAT_FILE: MSMg01no424_g06.g1 PHD_FILE: MSMg01no424_g06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:20 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTCAGTTGCGAATTCCTTGTTTAGCTCTGAGCTCCATTTTTTAAT
GGGGTTATTTGATTTTCGGGAGTCCAGCTTCTTGAGCTCTTTGTATATAT
TGGATAGTAGTCCCCTATCTGATATAGGATAGGTAAAGATCCTTTCCCAG
TCTGTTGGTGGCCTTTTTGTCTTATTGATGGTGTCTTTTGCCTTACAGAA
ACTTTGCAGTTTCATGAGGTCCCATTTATCAATTCTCGATCTTACAGCAC
AAGCCATTGCTGTTCTATTAAGGAATTTTTCCCCTGTACCCATATCTTCA
AGACTTATCCCCACTTTCTCCTCTATAAGTTTCATTGTCTCTGGTGTTAT
GTGGAGTTCCTTAAACCACTTAGATTTGACTTTAGTACAAGGAGATAGGA
ATGGATCAATTCCCATTTTCCTACATGATAACCACCAGTTGTGTCAGCAC
CATTTGTTGAAAATGCTGTCTTTTTTCCACTGGATAGTTTTAGTACCCTT
GTCAAAGATCAAGTGACCATCGGTGTGTGGGTTCATTTCTGGGTCTTCAA
TTCTGTTCCATTGGTCTACTTGTCTGTCGCTATACCAGTACCATGCAGTT
TTTTATCACAATTGCTCTGTAGTACAGCTTTAAGTCAGGCATGGTGATTT
CACCAGAGGTTCTTTTATCCTTGAGAAGAGTTTTG
CGCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACAGAGATCCTCTTGCCTCTGT
CTCCTAAGTGCTGGAATTAAAGGCATGAGCCACTAACACCTGGACATACT
TGTACACTATTCCACCTCCTTAGAAACTCTCACACTCCATGCATATACTT
TTTGGACAGCTATATATTCTTAGTAATTAGCCTTTTCCTCCTAAGCAACA
TCATTCTTCATATTTTTTTTTCTTCTGAGTTCTACTTGATCCAACATGTT
TAGTGACTTCAGAATACTACTGGTTAAGGTATGTACCATAAATATTCTTG
TAGACAGTACAAAGTTTAATATTGCTTTTTAAACCAGTTGAATACTCACT
ATCTTTTAATTGGTATGTTTAAGCCATTCATGTTGGATGTATTTTTTATG
TGTTTAATATTAAAATCTGTGGCAGGCTAAAGACGGGACAGACTGACACT
GGCCTTACCTCTGTACTGTGGATCTGTGAGGAAGCAGTTCAACTCTCAAA
CAGGAGACCCAAGCAGCTTGACATTCATTCTCATCACCATGAACTCCTCA
TACCTGATTCTATCTTTATAATATCAAAACATCATCTTTAGTTTTACACA
GAGCCTGTGTACAATAACTGTTCAATGTACACCATGTCACCTGTACTTTG
GTAAAAAGGAGAACCCTACTTTATTACTATTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no424_g06.g1 MSMg01no424_g06.g1 CHROMAT_FILE:
MSMg01no424_g06.g1 PHD_FILE: MSMg01no424_g06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:20 2005
         (534 letters)



>mm_chr8_4709666_4710599
          Length = 934

 Score = 1025 bits (530), Expect = 0.0
 Identities = 533/534 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagagatcctcttgcctctgtctcctaagtgctggaattaaaggcatgagccactaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acagagatcctcttgcctctgtctcctaagtgctggaattaaaggcatgagccactaaca 260

                                                                       
Query: 61  cctggacatacttgtacactattccacctccttagaaactctcacactccatgcatatac 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctggacacacttgtacactattccacctccttagaaactctcacactccatgcatatac 320

                                                                       
Query: 121 tttttggacagctatatattcttagtaattagccttttcctcctaagcaacatcattctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttttggacagctatatattcttagtaattagccttttcctcctaagcaacatcattctt 380

                                                                       
Query: 181 catatttttttttcttctgagttctacttgatccaacatgtttagtgacttcagaatact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catatttttttttcttctgagttctacttgatccaacatgtttagtgacttcagaatact 440

                                                                       
Query: 241 actggttaaggtatgtaccataaatattcttgtagacagtacaaagtttaatattgcttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actggttaaggtatgtaccataaatattcttgtagacagtacaaagtttaatattgcttt 500

                                                                       
Query: 301 ttaaaccagttgaatactcactatcttttaattggtatgtttaagccattcatgttggat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttaaaccagttgaatactcactatcttttaattggtatgtttaagccattcatgttggat 560

                                                                       
Query: 361 gtattttttatgtgtttaatattaaaatctgtggcaggctaaagacgggacagactgaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtattttttatgtgtttaatattaaaatctgtggcaggctaaagacgggacagactgaca 620

                                                                       
Query: 421 ctggccttacctctgtactgtggatctgtgaggaagcagttcaactctcaaacaggagac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctggccttacctctgtactgtggatctgtgaggaagcagttcaactctcaaacaggagac 680

                                                                 
Query: 481 ccaagcagcttgacattcattctcatcaccatgaactcctcatacctgattcta 534
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccaagcagcttgacattcattctcatcaccatgaactcctcatacctgattcta 734


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space:   484176
Effective search space used:   484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)