Query= MSMg01no424_k15.b1 MSMg01no424_k15.b1 CHROMAT_FILE:
MSMg01no424_k15.b1 PHD_FILE: MSMg01no424_k15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:40 2005
(601 letters)
>mm_chr8_101063560_101064559
Length = 1000
Score = 948 bits (490), Expect = 0.0
Identities = 550/584 (94%), Gaps = 26/584 (4%)
Strand = Plus / Plus
Query: 19 tattctttgtttggtggattattccctgggaaccctgtggagcccagttaattgatattg 78
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 241 tattctttgtttggtggattactccctgggaaccctggggagcccagttaattgatattg 300
Query: 79 ctgttcttcctatggggttgcaacccctttatttctaggtttttgaggaatcttcacaga 138
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 301 ctgttcttcctatggggttgcaacccctttatttctaggattttgaggaatcttcacaga 360
Query: 139 gtaatatttgaataatttccacagaggctgtaataatttgcacttccataagtagttaat 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gtaatatttgaataatttccacagaggctgtaataatttgcacttccataagtagttaat 420
Query: 199 aaggtttttctcagtagtgaatagggtttttctcagtagtgagtagggtttctctcagta 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aaggtttttctcagtagtgaatagggtttttctcagtagtgagtagggtttctctcagta 480
Query: 259 gtgagtattgtttctctcagtagtgaataagaattatctcagtgatgaatagggattttc 318
|||| ||||||||| ||||||||||||||||||||||||
Sbjct: 481 gtga----------------------ataagaattttctcagtgatgaatagggattttc 518
Query: 319 tcagtagtgactaagggttcttctttccccaccatctcccatcatttttatttactttat 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 tcagtagtgactaagggttcttctttccccaccatctcccatcatttttatttactttat 578
Query: 379 tgatgacagtccttccttctttaaagaggaagaactctcaaattattgttatttattctt 438
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 579 tgatgacagtccttccttctttaa-gaggaaaaactctcaaattattgttatttattctt 637
Query: 439 ttgaggattttcttttcttttttgatattttatctgtttcattcttattggatattttct 498
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 638 ttgaagattttcttttcttttttgatattttatctgtttcatttttattggatattttct 697
Query: 499 ttatttacatttcaaatgttatcccctttcctggttcccccccccagaagtcccctatcc 558
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 698 ttatttacatttcaaatgttatcccctttcctgat-cccccccccagaagtcccctatcc 756
Query: 559 tatcccccatcctcctgctcctatgatgg-tgctcccccaccca 601
|||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 757 tatcccccatcctcctgctcctatga-ggctgctcccccaccca 799
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1000
Length adjustment: 10
Effective length of query: 591
Effective length of database: 990
Effective search space: 585090
Effective search space used: 585090
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no424_k15.g1 MSMg01no424_k15.g1 CHROMAT_FILE:
MSMg01no424_k15.g1 PHD_FILE: MSMg01no424_k15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:40 2005
(245 letters)
>mm_chr8_101249936_101250581
Length = 646
Score = 422 bits (218), Expect = e-122
Identities = 239/246 (97%), Gaps = 1/246 (0%)
Strand = Plus / Minus
Query: 1 ctactaaccttaaattcctaaatttaaacactggtcccagaaagagcagatttcaaatcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ctactaaccttaaattcctaaatttaaacactggtcccagaaagagcagatttcaaatcc 387
Query: 61 agttttattttttcttttttggtgaaagagtctgtatttatctacagttcagccaaacag 120
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 386 agttttattttttcttttttggtgaaagaatctgtatttatttacagttcagccaaacag 327
Query: 121 ggaggagctagatgtctctccccaattcttgtgatcactttacaatttaaagagaatgat 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ggaggagccagatgtctctccccaattcttgtgatcactttacaatttaaagagaatgat 267
Query: 181 gaaacaaaggttataacacattcgaactcatggataagttaaatagtcttttaaccc-tc 239
|||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||| ||
Sbjct: 266 gaaacaaaggttataacacatttgaactcatggataagttaaatagtcctttaccccctc 207
Query: 240 tttcct 245
||||||
Sbjct: 206 tttcct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 646
Length adjustment: 9
Effective length of query: 236
Effective length of database: 637
Effective search space: 150332
Effective search space used: 150332
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
