BAC Information

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BAC

Clone NameMSMg01-424P10
Chromosome8 (Build37)
Map Location 42,482,925 - 42,483,201
singlet/doubletsinglet
Overlap geneFrg1
Upstream geneZdhhc2, Cnot7, Vps37a, Mtmr7, LOC100039179, Adam24, LOC667019, LOC100039170, LOC436137, Adam25, EG667041, LOC667052, LOC384806, Adam39, LOC384808, EG667077, Slc7a2, Pdgfrl, Mtus1, Fgl1, Pcm1, Asah1
Downstream geneLOC100039376, Gm1815, LOC671994, Zfp353, EG620772
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-424P10.T7 (MSMg01no424_p10.b1)MSMg01-424P10.TJ (MSMg01no424_p10.g1)
ACCAG518759AG518760
length743755
length of high quality
(start - end)
567 (69 - 635)278 (334 - 611)
definitionCHROMAT_FILE: MSMg01no424_p10.b1 PHD_FILE: MSMg01no424_p10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:03 2005CHROMAT_FILE: MSMg01no424_p10.g1 PHD_FILE: MSMg01no424_p10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNGNGG
AATTCCTAGTTCCCTAAACTCCAGACAATGGTACATACCCACCTCTGCCC
CCTCCCCAAAAACTATACAGCCCCTGAATCACCCTAAATAAAGTTGAGCT
TCCTCTCTGAAGGTGATCTGGGTAGTCTGTCATATTCATGGGCCTTCTGT
TCCTTTTGTCCTCCTGGGCTGGTGGCCAATAGACTTGGGGGAAAAGGAGG
ACCATAAGAACTTAGGTATGACACCCATGGAAGGAGTTACAGAGACAAAA
TTTGGAGCTGTGACTTTATGATGGACCATCTTGTGATTGCCATATCCAGA
GATCCATCCCATAATCAGCTTCCAAACACTGACACCATTGCATACACTAG
CAAGATTTTGCTGAAAGGACCCAGATATAGCTGTCTCTTGTGAGACTATG
CCGGGGCCTAGAAAACACATAAGTGGATGCTCACAATCAGCTATTGGATG
GATCACAGGGCCCCCAATGAAGGAGCTAGAGAAAGTACCCAAGGAGCTAA
AGGGATCTGCAGTTCTATAGGTGGAACAACAATATGAACTAACCAGTACC
CTGGAGCTCTTGACTCTAGCTGCATATGTATCANAAGATGGCCTAGTCGG
CCGTCACTACAAAGAGAGGCCCATTGGACACGCAAACTGTATATGCCCCA
GTACAGGGGAACGCCAGGGCCTAAAAGGGGTAGTGGGTTGTAN
CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGAATAAAGAGTCCTGCAG
TCCTTAAGAGGGTACACTTACCTGAAAAGTAAATCCCGTGAAGGGCCAAC
GTTAACCATGACCAGCCAGGTCAAACCAGAAACTAAATTTAGCAACAGTT
TCAAAAGGACTCGAGAACTCTGTAAAAGCACTTATATCAAATATTTTTAT
TCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGGGAGGAGACA
AAGAAAGAAAGAAACAACAACAACTATTTTTTTCACAGAAAAAAACCCAA
AGCTACACAAAATGTCCACGTCACTTGCAGTATCGGTCAGCTTTCAATTT
GGCTCTCCTGTTTAAGACAAAAAAACATCGATGTAAAACACACCATACAG
AGAGAGTCAATTGATAAAACAGAAAATTCATGCTTAGAAATTGTTCTATT
TTCATAACTGTATCAAATATTGATAGTTATCCTTACCTTTCAATTTTCTT
TTTATATAAAACTGATTCTAGTCTTATGAAACATTATTTTTATAATATTT
CACAAATGTGGCTTAAAGGCCTTTTCAGTTCACGAGAGAAATGATAGTTA
TTTATGAACTAAATTAGTTTTCTCTTCCCTAACCTTCTTGGGCAGCAATG
TGTGGGTTCCTTTACATTAGTCTGACCTGCCTCTACTCTCCTTATTCTTC
AGCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no424_p10.g1 MSMg01no424_p10.g1 CHROMAT_FILE:
MSMg01no424_p10.g1 PHD_FILE: MSMg01no424_p10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:03 2005
         (278 letters)



>mm_chr8_42482725_42483401
          Length = 677

 Score =  530 bits (274), Expect = e-155
 Identities = 277/278 (99%), Gaps = 1/278 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacagaaaaaaacccaaagctacacaaaatgtccacgtcacttgcagtatcggtcagctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacagaaaaaaacccaaagctacacaaaatgtccacgtcacttgcagtatcggtcagctt 260

                                                                       
Query: 61  tcaatttggctctcctgtttaagacaaaaaaacatcgatgtaaaacacaccatacagaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaatttggctctcctgtttaagacaaaaaaacatcgatgtaaaacacaccatacagaga 320

                                                                       
Query: 121 gagtcaattgataaaacagaaaattcatgcttagaaattgttctattttcataactgtat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagtcaattgataaaacagaaaattcatgcttagaaattgttctattttcataactgtat 380

                                                                       
Query: 181 caaatattgatagttatccttacctttcaattttctttttatataaaactgattctagtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaatattgatagttatccttacctttcaattttctttttatataaaactgattctagtc 440

                                                 
Query: 241 ttatgaaacattatttttataatatttcacaaatgtgg 278
           ||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 ttatgaaacattatttt-ataatatttcacaaatgtgg 477


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 677
Length adjustment: 9
Effective length of query: 269
Effective length of database: 668
Effective search space:   179692
Effective search space used:   179692
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)