BAC Information

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BAC

Clone NameMSMg01-425N06
Chromosome8 (Build37)
Map Location 82,259,070 - 82,457,682
singlet/doubletdoublet
Overlap geneAnapc10, LOC100039439
Upstream geneLsm6, EG666340, EG666346, D630040G17Rik, 1700011L22Rik, Mmaa, A630049P17, Smad1, LOC666378, LOC666388, LOC666392, Otud4, Tpd52-ps, Abce1
Downstream geneHhip, LOC546075, Gypa, Frem3, Smarca5, Gab1, LOC666237, LOC100039496, LOC234501
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-425N06.T7 (MSMg01no425_n06.b1)MSMg01-425N06.TJ (MSMg01no425_n06.g1)
ACCAG519418AG519419
length753751
length of high quality
(start - end)		547 (41 - 587)493 (71 - 563)
definitionCHROMAT_FILE: MSMg01no425_n06.b1 PHD_FILE: MSMg01no425_n06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:09 2005CHROMAT_FILE: MSMg01no425_n06.g1 PHD_FILE: MSMg01no425_n06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,457,383 - 82,457,682)(82,259,070 - 82,259,553)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
AATAATATTCCAGAAAATATGTGTTTTATTTAGCACAAATGAAAGGAGAA
ATAACACAAAAGAGGAATTTAAAAGCCTCGAAACATACAAAAATCAGCAA
GACATAGGCACAAAATATTAGTGACTGCATTAAATGTAAATGAATTAAAC
ATTCTAGTTGAAATACAAAAACTGGAAGAGTAAAGTTTTATAAATGCAAC
AATATGCTATCTACAAATACACATGTAGGGGCCAGCAAGATGACTCAGCA
GGTAAAGGCACTGGTTGTGCAAGCTCAACAATGGAGTCCAATCTCTAAAG
CCTATATAAAGGGGAGGAGAGAGCCAATTCCATAAAAATTGTCCTCTGGC
CTCCACTCCCACACTCTGTCATGCATGTGCCTTCACACACATATACATGC
AACACAGACACAAACTTTTTTAAAAAAAATTAAAATTGAAGATACAATTT
AGTTGAAAGTAAAACCCATGAAGATAAAGCACCATTCAATCAGCACATAT
ATGTACTTAACTGGAGGACACCAAAATACGTGAAGCCACAACTAATAGAA
TTGAGGAGAGGGAGGCGGCTGCGGAGGAATCAACAATAACCACTGTGCAT
TCCCTACTCTACTTTCCTTAAACCAATAATATCTCAGACTACTTTATTAG
CATTCCCATCCTCCAAACTATTGAACTCTCTCCTCCCATAAAAATTATAT
GTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGATACTAAGAAGTAATTAAGACACTGAAC
TTTTATGAGGGTTTTGGAGCCTTCCTTTCATAAGTTATAGGATTGCTTTA
ACTGAACGAAAAGTCATCCTTTTATATTTCCCATGGATTCTGTCTGTGAG
AGGCTTTAGTACATACTGAAGTATTTTAGTAGGGTTCCTTTCTCTTTTTC
TAGAAATTATGTCTCTGCTTAAACTATTTTAAATATTCATTTTCTATAAC
CTCACTGTCGTGAAGTAGTAACTTAAGATTTGAAGATGAGAAGAACAAAT
GACTGCCTTAACATGATCTTCCTTCACTTCAGTTATGGAGTGTAGCTAGA
CCTTTGTTATCACTGCTGAGGACTCTCCAGAAGGATCTCCATGATTCAGC
AATGTGTGCTTGATTCTGTATAACTGAGGGGGTTGAAAATGAACTTTCTA
TTGATAGAAAGTTGACTTGGGCCAAATTGAGCTTTCTTTCTTTTCTTTTT
TTTTTTTTTTCCAAACAGATTTTATTTAAGTATATGCCACCCACTTTATT
TTTAAAGATTTGCAATTTTTTTTATTTAGGAAATTTTATAAGGCATTAAC
ATTCTATTAGCCAAAATTGTATTTACCAAAGAGATTCTCTAAAACAAAAG
GGAGAATTTTTTTATTTTCGCCCTTGGCTTTAATTCCCTTTTCCGCCGTT
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no425_n06.b1 MSMg01no425_n06.b1 CHROMAT_FILE:
MSMg01no425_n06.b1 PHD_FILE: MSMg01no425_n06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:09 2005
         (547 letters)



>mm_chr8_82456736_82457682
          Length = 947

 Score =  557 bits (288), Expect = e-163
 Identities = 297/300 (99%)
 Strand = Plus / Minus

                                                                       
Query: 248 agatgactcagcaggtaaaggcactggttgtgcaagctcaacaatggagtccaatctcta 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 947 agatgactcagcaggtaaaggcactggttgtgcaagctcaacaatggagtccaatctcta 888

                                                                       
Query: 308 aagcctatataaaggggaggagagagccaattccataaaaattgtcctctggcctccact 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 887 aagcctatataaaggggaggagagagccaattccataaaaattgtcctctggcctccact 828

                                                                       
Query: 368 cccacactctgtcatgcatgtgccttcacacacatatacatgcaacacagacacaaactt 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 cccacactctgtcatgcatgtgccttcacacacatatacatgcaacacagacacaaactt 768

                                                                       
Query: 428 ttttaaaaaaaattaaaattgaagatacaatttagttgaaagtaaaacccatgaagataa 487
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 tttaaaaaaaaattaaaattgaagatacaatttagttgaaagtaaaacccatgaagataa 708

                                                                       
Query: 488 agcaccattcaatcagcacatatatgtacttaactggaggacaccaaaatacgtgaagcc 547
           ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 agcaccatttaattagcacatatatgtacttaactggaggacaccaaaatacgtgaagcc 648


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space:   503169
Effective search space used:   503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no425_n06.g1 MSMg01no425_n06.g1 CHROMAT_FILE:
MSMg01no425_n06.g1 PHD_FILE: MSMg01no425_n06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:09 2005
         (493 letters)



>mm_chr8_82258870_82259762
          Length = 893

 Score =  882 bits (456), Expect = 0.0
 Identities = 477/484 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agatactaagaagtaattaagacactgaacttttatgagggttttggagccttcctttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agatactaagaagtaattaagacactgaacttttatgagggttttggagccttcctttca 260

                                                                       
Query: 61  taagttataggattgctttaactgaacgaaaagtcatccttttatatttcccatggattc 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 taagttataggattgctttaactgaacgaaaagtcattcttttatatttcccatggattc 320

                                                                       
Query: 121 tgtctgtgagaggctttagtacatactgaagtattttagtagggttcctttctctttttc 180
           |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtctgtgaggggctttagtacgtactgaagtattttagtagggttcctttctctttttc 380

                                                                       
Query: 181 tagaaattatgtctctgcttaaactattttaaatattcattttctataacctcactgtcg 240
           |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagaaagtatgtgtctgcttaaactattttaaatattcattttctataacctcactgtcg 440

                                                                       
Query: 241 tgaagtagtaacttaagatttgaagatgagaagaacaaatgactgccttaacatgatctt 300
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaagtagtaacttaagatttgaaggtgagaagaacaaatgactgccttaacatgatctt 500

                                                                       
Query: 301 ccttcacttcagttatggagtgtagctagacctttgttatcactgctgaggactctccag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccttcacttcagttatggagtgtagctagacctttgttatcactgctgaggactctccag 560

                                                                       
Query: 361 aaggatctccatgattcagcaatgtgtgcttgattctgtataactgagggggttgaaaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaggatctccatgattcagcaatgtgtgcttgattctgtataactgagggggttgaaaat 620

                                                                       
Query: 421 gaactttctattgatagaaagttgacttgggccaaattgagctttctttcttttcttttt 480
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaactttctattgatagaacgttgacttgggccaaattgagctttctttcttttcttttt 680

               
Query: 481 tttt 484
           ||||
Sbjct: 681 tttt 684


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space:   426489
Effective search space used:   426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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