Query= MSMg01no425_p09.b1 MSMg01no425_p09.b1 CHROMAT_FILE:
MSMg01no425_p09.b1 PHD_FILE: MSMg01no425_p09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:19 2005
(557 letters)
>mm_chr8_118823671_118824621
Length = 951
Score = 888 bits (459), Expect = 0.0
Identities = 526/553 (95%), Gaps = 14/553 (2%)
Strand = Plus / Minus
Query: 5 aaaaaagtatattgctatgtttttcaggttccacgctgcagctagcctttgagaaacacc 64
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 639 aaaaaagtatattgctatgtttttcaggttccatgctgcagctagcctttgagaaacacc 580
Query: 65 ccttttttagtttctgtgtagtatcaaaaatactctccctgttatctaagaattaagtta 124
|| |||| ||||||||||||||||||||| ||||||||||||||||| ||| ||||||
Sbjct: 579 cc-ttttgagtttctgtgtagtatcaaaattactctccctgttatctgaga---aagtta 524
Query: 125 ttaacctcatttattctttcctatcttgcattttaagtttaagtgtcattgtgtacttta 184
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 523 ttaacctcatttattcttttctatcttgcat------tttaagtgtcattgtgtactttg 470
Query: 185 gctgataatgataatgacaatgatagtttaagtgcaggaagtgatgtgacggtctgcttt 244
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 gctgataatgataatgataatgatagtttaagtgcaggaagtgatgtgacggtctgcttt 410
Query: 245 ctactaaaggacacctaaaagacttaacacagtcataccactaagctagtattgtctcag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 ctactaaaggacacctaaaagacttaacacagtcataccactaagctagtattgtctcag 350
Query: 305 aagctgttgggtttttaaaaaattgttttaaactgtgtgtgtgtgtgtgtgtgtgtggat 364
|||||||||||||||| |||||||||||||||| |||||||||||| | | | |||| |
Sbjct: 349 aagctgttgggttttt-taaaattgttttaaactatgtgtgtgtgtg-g-gggggtgg-t 294
Query: 365 ggttatgtgcatgtgtatgttcctatagatgccagaagggtatgtcatattcctgaagtt 424
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 ggttatgtgcatgtgtgtgttcctatagatgccagaagggtatgtcatattcctgaagtt 234
Query: 425 gaagttataggcagttgtgaattgcctgaagtgggtgctaggaactaaacccagaccctc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 gaagttataggcagttgtgaattgcctgaagtgggtgctaggaactaaacccagaccctc 174
Query: 485 tacaagagcatcaggtgtttttaaccactgagctacctcatcatcccccactgttatttt 544
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 173 tacaagagcatcaggtgtttttaaccactgagccacctcatcatcccccactgttatttt 114
Query: 545 ttaaaatgaagtt 557
|||||||||||||
Sbjct: 113 ttaaaatgaagtt 101
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 951
Length adjustment: 10
Effective length of query: 547
Effective length of database: 941
Effective search space: 514727
Effective search space used: 514727
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no425_p09.g1 MSMg01no425_p09.g1 CHROMAT_FILE:
MSMg01no425_p09.g1 PHD_FILE: MSMg01no425_p09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:19 2005
(304 letters)
>mm_chr8_118685384_118686087
Length = 704
Score = 507 bits (262), Expect = e-148
Identities = 292/304 (96%), Gaps = 6/304 (1%)
Strand = Plus / Plus
Query: 1 agtgttctacaagcaaattctgggtctgttgccagtgcatgataagttgtagtctaaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtgttctacaagcaaattctgggtctgttgccagtgcatgataagttgtagtctaaaaa 260
Query: 61 gacaggcgtgagaaaggaagtcagagtccagggcgttgactggatctctaatggaaaagg 120
|||||| ||||||||||||||||| || |||||||||| |||||||||||||||||||||
Sbjct: 261 gacaggtgtgagaaaggaagtcagggttcagggcgttgtctggatctctaatggaaaagg 320
Query: 121 agttcctgcagacatgggtccccgaaatgtgccttactccagagacattcttctggttat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agttcctgcagacatgggtccccgaaatgtgccttactccagagacattcttctggttat 380
Query: 181 aaagagagtggtatcagggtgcaggttaatttagaagccattaatagatgatagacttat 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 aaagagagtggtatcagggtgcaggttaatttagaagccattaacagatgatagacttat 440
Query: 241 gga----gatagatagatagatagatagatagatagatagatagatagatagatagatag 296
||| ||||||| |||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 441 ggatacagatagat-gatagatagatagatagatagatagatagataga-agaaagatag 498
Query: 297 atag 300
||||
Sbjct: 499 atag 502
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 77
Number of extensions: 30
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 704
Length adjustment: 9
Effective length of query: 295
Effective length of database: 695
Effective search space: 205025
Effective search space used: 205025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
