Query= MSMg01no426_c21.b1 MSMg01no426_c21.b1 CHROMAT_FILE:
MSMg01no426_c21.b1 PHD_FILE: MSMg01no426_c21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:37 2005
(279 letters)
>mm_chr8_4496742_4497420
Length = 679
Score = 489 bits (253), Expect = e-143
Identities = 271/281 (96%), Gaps = 8/281 (2%)
Strand = Plus / Plus
Query: 3 ggaattcatgccagat----tccctggctctgttaaaattctgctatggtgattcaacta 58
|||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattcatgccagatagaat----ggctctgttaaaattctgctatggtgattcaacta 258
Query: 59 aggatggattgggcagagaaacagtattccaaaccaaaaaggataagcagatacaaggct 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 aggatggattgggcagagaaacagtattccaaaccaaaaaggataagcagatacaaggct 318
Query: 119 ctaagcacattgctgggcacttggaggagtaattagtagagatttgaaagaacattgaga 178
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ccaagcacattgctgggcacttggaggagtaattagtagagatttgaaagaacattgaga 378
Query: 179 tctatgggggctggagagattgctcattggttcttgcttgcagaggacctgaattcagat 238
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 379 tctatgggggctggagagattgctcattggttcttgcttgcagaggacctgagttcagat 438
Query: 239 cccagcacccccaattatgtggcttacaacgacttggtgaa 279
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 cccagcacccccaattatgtggcttacaacgacttggtgaa 479
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space: 180900
Effective search space used: 180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no426_c21.g1 MSMg01no426_c21.g1 CHROMAT_FILE:
MSMg01no426_c21.g1 PHD_FILE: MSMg01no426_c21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:37 2005
(423 letters)
>mm_chr8_4601110_4601932
Length = 823
Score = 789 bits (408), Expect = 0.0
Identities = 411/412 (99%)
Strand = Plus / Minus
Query: 1 aactcatatatatctccaggccaaacggaataaaaaaaacccagaagcacagtggaaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 aactcatatatatctccaggccaaacggaataaaaaaaacccagaagcacagtggaaaag 353
Query: 61 tatctggtaaacaagttcatgtttacatgggccaggcaggaacaagaaatgactcagggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 tatctggtaaacaagttcatgtttacatgggccaggcaggaacaagaaatgactcagggc 293
Query: 121 tattgcagtttggctaaaaacacagtgtgctgatgccttgggtggcaagctagcaaagca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 tattgcagtttggctaaaaacacagtgtgctgatgccttgggtggcaagctagcaaagca 233
Query: 181 actcatcttagagagggtgtcagggcccaacagtctgcaagggaaagagtggggatggag 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 232 actcatcttagagagggtgtcagggcccaacagtctgcaagggagagagtggggatggag 173
Query: 241 ggacaagagatgaaaagaatggagacaagacagtctgtctgatcaactctcatttattga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 ggacaagagatgaaaagaatggagacaagacagtctgtctgatcaactctcatttattga 113
Query: 301 aaggaaattatgaatatataagtgccagtggggagtgcagctggagacacttaaccacaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 aaggaaattatgaatatataagtgccagtggggagtgcagctggagacacttaaccacaa 53
Query: 361 atgccttgcagctgggggcactaaactgtcaggagccataatgggacaagct 412
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52 atgccttgcagctgggggcactaaactgtcaggagccataatgggacaagct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 823
Length adjustment: 9
Effective length of query: 414
Effective length of database: 814
Effective search space: 336996
Effective search space used: 336996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
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