BAC Information

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BAC

Clone NameMSMg01-426E20
Chromosome8 (Build37)
Map Location 35,972,925 - 36,147,684
singlet/doubletdoublet
Overlap geneTnks, LOC666792
Upstream geneRbpms, LOC100042769, Dctn6, LOC100042777, Mboat4, Leprotl1, LOC666694, Tmem66, LOC619780, LOC666718, EG234159, LOC666746, Dusp4, LOC675578
Downstream geneLOC666797, LOC666804, Ppp1r3b, Thex1, Mfhas1, LOC100041572, Gm501, Cldn23, LOC671641
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426E20.T7 (MSMg01no426_e20.b1)MSMg01-426E20.TJ (MSMg01no426_e20.g1)
ACCAG519776AG519777
length769781
length of high quality
(start - end)		440 (44 - 483)415 (72 - 486)
definitionCHROMAT_FILE: MSMg01no426_e20.b1 PHD_FILE: MSMg01no426_e20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:47 2005CHROMAT_FILE: MSMg01no426_e20.g1 PHD_FILE: MSMg01no426_e20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,972,925 - 35,973,360)(36,147,270 - 36,147,684)
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAATTATCTTACTATATAATTAACAGTACCGCCTCAAACCTAAGTACT
CTTTCCCATCATTTTACTATTCAGTGACATCAGAATCTTTTTTAATGATA
AAATTTTCATGCTGTATATTCAGTAACTCTTTAAGGTCTTGGAAATTTAG
TTATTCAAAATTAAAAATATATATTAGCTGTTGAGCTATTTGTGATGGTT
TGTATATTCTTGGACTAGGGAGTGGCACCATCTGGAGGTGTGGCCTGGTT
GGAATAGGTGTGTCACTGTGGGTGTGGGCTTAAGACTCTCACCCCAGTTA
CCTGGAAGTCAGTCTTCCACTAGCAGCCTTTGGATGAAGACACAGAACTC
ACAGCTCCTCCTGCACCATGCCTTCCTGGATACTGCCACGCTCCCACCTT
GAAGGTAATGGACTGAACCTCTGAACCTGTAAGCCAGCCCCCATTAAATG
TTGCTTTTTATAAAACTTGCCTTGGTCACGGTGTCTGTTCCCAGCAATAA
AACCTTACTAAAGCCCTATTCTAATTTTGGGGTTTTTTTTTTGTTTCTTC
TATCAATTCGTAAGCCCACCCCCTCTTTCTTCTTCCTTCTACTTTATATT
CTCTAATTCCGCTTTCCCGCTTTCCTTATCATCTTCTCCCCCTATTTTGC
TCATTCTCACTTACTTACCCATCTCTTATCCTTTACCGTAATCATTACCA
ATCTCCAACATTCTTTATG

ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCAGCGCAGGATGCCTTTGGTGTTGATCA
TGCAGTTATTTCCTGGATGAGGGGAGTGGGCAGGACAGCAGGCGAGTCGC
CTCTCCACATTACCTGCTTGTGGTGTTTCCCTGATTTTTCTAAACACAAA
CATGAGGGATTTAAGACAACCGAGAGTTACTTTTAAAACCAAGCCTGTCC
ACAGAAAACACATATTTCTTTCACCCCTCCCCCCTTCTCAGGAAATCTTG
CGTTGCAGCTAAAGCCTATGTGTTCTGTGTCTATTATCTCTGTAGCCAGG
ACATTTTATTAAAATGGCAAATGTGAGTTGTAGGAAAATTCATATGGCTG
CAGCAGATTCTAGCTTATAGATCAGTAAGAGCTATGCCTAGATATCCAAC
GTGTCTCATAGCTGGAAGCGTTAGAATATGTGGAATCTTTAATAAGGAAA
GCCCTGGAGGCTCAGTGCCCACTTCCGCAAGCAGGGACCACTGTGGGTTG
TCCAAATTTTTAAAGGCCTAAAAAGCGGGGGAACAATATTGGAAGGATTG
GGGGTCCTTCTAAACACTACCTTGGTACAAAGTTTTAAACTTCTTCTTTT
ACTACAACCCTTTGTACTTTTTCTTGTTTGTTTTATTTTTTTTCCCCTTA
CCCCTCTCCTTCTTTAAATTGTTCTTTTTCTCCCTCTTCTTTTCTTTCTA
TCTTTTCTCTTCCTTTTTTTCCTCTTCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_e20.b1 MSMg01no426_e20.b1 CHROMAT_FILE:
MSMg01no426_e20.b1 PHD_FILE: MSMg01no426_e20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:47 2005
         (440 letters)



>mm_chr8_35972721_35973560
          Length = 840

 Score =  835 bits (432), Expect = 0.0
 Identities = 435/436 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaattatcttactatataattaacagtaccgcctcaaacctaagtactctttccc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaattatcttactatataattaacagtaccgcctcaaacctaagtactctttccc 264

                                                                       
Query: 65  atcattttactattcagtgacatcagaatcttttttaatgataaaattttcatgctgtat 124
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 265 atcattttactattcagtgacatcagaatcttttttaacgataaaattttcatgctgtat 324

                                                                       
Query: 125 attcagtaactctttaaggtcttggaaatttagttattcaaaattaaaaatatatattag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 attcagtaactctttaaggtcttggaaatttagttattcaaaattaaaaatatatattag 384

                                                                       
Query: 185 ctgttgagctatttgtgatggtttgtatattcttggactagggagtggcaccatctggag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctgttgagctatttgtgatggtttgtatattcttggactagggagtggcaccatctggag 444

                                                                       
Query: 245 gtgtggcctggttggaataggtgtgtcactgtgggtgtgggcttaagactctcaccccag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtgtggcctggttggaataggtgtgtcactgtgggtgtgggcttaagactctcaccccag 504

                                                                       
Query: 305 ttacctggaagtcagtcttccactagcagcctttggatgaagacacagaactcacagctc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttacctggaagtcagtcttccactagcagcctttggatgaagacacagaactcacagctc 564

                                                                       
Query: 365 ctcctgcaccatgccttcctggatactgccacgctcccaccttgaaggtaatggactgaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctcctgcaccatgccttcctggatactgccacgctcccaccttgaaggtaatggactgaa 624

                           
Query: 425 cctctgaacctgtaag 440
           ||||||||||||||||
Sbjct: 625 cctctgaacctgtaag 640


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space:   358161
Effective search space used:   358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no426_e20.g1 MSMg01no426_e20.g1 CHROMAT_FILE:
MSMg01no426_e20.g1 PHD_FILE: MSMg01no426_e20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:47 2005
         (415 letters)



>mm_chr8_36147070_36147884
          Length = 815

 Score =  803 bits (415), Expect = 0.0
 Identities = 415/415 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagcgcaggatgcctttggtgttgatcatgcagttatttcctggatgaggggagtgggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 tcagcgcaggatgcctttggtgttgatcatgcagttatttcctggatgaggggagtgggc 556

                                                                       
Query: 61  aggacagcaggcgagtcgcctctccacattacctgcttgtggtgtttccctgatttttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 aggacagcaggcgagtcgcctctccacattacctgcttgtggtgtttccctgatttttct 496

                                                                       
Query: 121 aaacacaaacatgagggatttaagacaaccgagagttacttttaaaaccaagcctgtcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 aaacacaaacatgagggatttaagacaaccgagagttacttttaaaaccaagcctgtcca 436

                                                                       
Query: 181 cagaaaacacatatttctttcacccctccccccttctcaggaaatcttgcgttgcagcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 cagaaaacacatatttctttcacccctccccccttctcaggaaatcttgcgttgcagcta 376

                                                                       
Query: 241 aagcctatgtgttctgtgtctattatctctgtagccaggacattttattaaaatggcaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 aagcctatgtgttctgtgtctattatctctgtagccaggacattttattaaaatggcaaa 316

                                                                       
Query: 301 tgtgagttgtaggaaaattcatatggctgcagcagattctagcttatagatcagtaagag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tgtgagttgtaggaaaattcatatggctgcagcagattctagcttatagatcagtaagag 256

                                                                  
Query: 361 ctatgcctagatatccaacgtgtctcatagctggaagcgttagaatatgtggaat 415
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 ctatgcctagatatccaacgtgtctcatagctggaagcgttagaatatgtggaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 815
Length adjustment: 9
Effective length of query: 406
Effective length of database: 806
Effective search space:   327236
Effective search space used:   327236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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