BAC Information

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BAC

Clone NameMSMg01-426L10
Chromosome8 (Build37)
Map Location 53,289,140 - 53,335,212
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC667517, LOC623872, LOC100040220
Downstream geneLOC623935, 1190028D05Rik, LOC676688
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426L10.T7 (MSMg01no426_l10.b1)MSMg01-426L10.TJ (MSMg01no426_l10.g1)
ACCAG520088AG520089
length801804
length of high quality
(start - end)		473 (40 - 512)479 (69 - 547)
definitionCHROMAT_FILE: MSMg01no426_l10.b1 PHD_FILE: MSMg01no426_l10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:21 2005CHROMAT_FILE: MSMg01no426_l10.g1 PHD_FILE: MSMg01no426_l10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,289,140 - 53,289,608)(53,334,734 - 53,335,212)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
TTACCATCTGTTCTATATATAATTTTTATTAATATGTGCAGTTTCTTGTT
TGGCAACTAATTATCTTGTTTATTTTATGAGGATGTATTATAATTCATAT
TTTCTTTTAGGTAATTATTATTTGTGAGTTTTCAATCTATTTTAATGCAT
TCAGCCAAAATATGGACATCACTTCCTTCAGTCAATTTTTCTAATTTTGT
GTTTAATCTTAAAGTTAATAAATAGAAAAACACAAATAAAAGTTGTTTCA
CAATTTAAAATATACACAAGTTGTTTTAATAAAGAACAGAAATCATGAAG
AATAACTACTAATGTGTGCACAAACTATGTTTCAATAAACTGAAGGAAAG
GCTCTGTTTAAATTAAAATTGGATTTGACAATAAGTAAGTAAACAAATAA
ATGATTATGGATATTTTAAATGCTTGGACATATCAATGATTTTCAATAGA
ATTATCTTCCAAATACTAAATAATAGATTGTGTGCAGGGAGAGGAGGATG
GGGAAATCATGCAGAAAGGTAGGATCTTTTTCTCCTTCCTCTCCTCTTTC
TCTCTTTCTTCCTCATCCTTCTCTTCTTTCTCTTTTTTTCTTTCCTCCTC
TCTCTCCTACTCACTATTTTCCCTCTTCCTTTATTCCTTTTTTCCTCTTC
TCCCCCATTCTCTTCTTTTCTTTCTCAACTTCTATTCCTATTATCTTCTT
CTTTCTTATTTAATACTCCTTTCTTCTCTTCTTCCTTCCACCTTACTATC
N

ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGGAGTTGATTTCATAGTAATTGAGAAAGAAT
TGAGATTACAAGAGCATGGGTTGGGTATTAAGGGCAATTTAGAGAATAAT
TGATCAGTTGTGCTAGATTGCAGTAGTATCAAGACGTTCTATTTTATTGC
AGTACATTAATGTGCTACGATAACATAGATGACAATCAGGAATTGTGTAC
TTTAAATAATATATAGAATTAATATAATATAATAAACAATCAATGTTTAT
TAGCAAGTGTTACATACTAGACCTTTCTTGTATATTAAAAAATGTACACA
TATGTTTAAACCTTCATGGGACCTAATTAAGAGATCTGTTTTTAAGTTTC
TATTTGTCAGTTAAAAATAAATGTGTTACTATCAGAAAGTACATGTCAAG
AACTATGGATGATTTGAACTTCTGCCTTATTTAACAAGTTACCCTGTCTC
AGTTTCTCGTATGCTCCTGGGAGAAAGGAGACACCTAGGTCTGAGATGGG
GGGTCGTTATTGCTCACAGCACTGCAGGACGTGTGAGATTCATGATCATA
TGGGTTTTGCACAAGCCCTAAAGCCCCTTCTGACAATGTTGAGACAGCCC
CCGGTGGATGCTGTACACAGTTATTTCCTTGTTCCCGCTGGAAAAAATTT
GATTTTGGGAAAACTGCCTTTTTTAAAGAAAATTGGGTGCATTACCTGTC
CTAACATTTATCCCTTAAGGAGGGGTTTTTTTTTTGTTTACAATTTTTGG
GTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_l10.b1 MSMg01no426_l10.b1 CHROMAT_FILE:
MSMg01no426_l10.b1 PHD_FILE: MSMg01no426_l10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:21 2005
         (473 letters)



>mm_chr8_53288936_53289808
          Length = 873

 Score =  884 bits (457), Expect = 0.0
 Identities = 466/469 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttaccatctgttctatatataatttttattaatatgtgcagtttcttgtttgg 64
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttaccatctgttttatatataatttttattaatatgtgcagtttcttgtttgg 264

                                                                       
Query: 65  caactaattatcttgtttattttatgaggatgtattataattcatattttcttttaggta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caactaattatcttgtttattttatgaggatgtattataattcatattttcttttaggta 324

                                                                       
Query: 125 attattatttgtgagttttcaatctattttaatgcattcagccaaaatatggacatcact 184
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 attattatttgagagttttcaatctattttaatgcattcagccaaaatatggacatcact 384

                                                                       
Query: 185 tccttcagtcaatttttctaattttgtgtttaatcttaaagttaataaatagaaaaacac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tccttcagtcaatttttctaattttgtgtttaatcttaaagttaataaatagaaaaacac 444

                                                                       
Query: 245 aaataaaagttgtttcacaatttaaaatatacacaagttgttttaataaagaacagaaat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaataaaagttgtttcacaatttaaaatatacacaagttgttttaataaagaacagaaat 504

                                                                       
Query: 305 catgaagaataactactaatgtgtgcacaaactatgtttcaataaactgaaggaaaggct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 505 catgaagaataactactaatgtgtgcacaaactatgtttcaataaactgaatgaaaggct 564

                                                                       
Query: 365 ctgtttaaattaaaattggatttgacaataagtaagtaaacaaataaatgattatggata 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctgtttaaattaaaattggatttgacaataagtaagtaaacaaataaatgattatggata 624

                                                            
Query: 425 ttttaaatgcttggacatatcaatgattttcaatagaattatcttccaa 473
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttttaaatgcttggacatatcaatgattttcaatagaattatcttccaa 673


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space:   399569
Effective search space used:   399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no426_l10.g1 MSMg01no426_l10.g1 CHROMAT_FILE:
MSMg01no426_l10.g1 PHD_FILE: MSMg01no426_l10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:21 2005
         (479 letters)



>mm_chr8_53334420_53335298
          Length = 879

 Score =  888 bits (459), Expect = 0.0
 Identities = 474/479 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggagttgatttcatagtaattgagaaagaattgagattacaagagcatgggttgggtat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 aggagttgatttcatagtaattgagaaagaattgagattacaagagcatgggttgggtat 734

                                                                       
Query: 61  taagggcaatttagagaataattgatcagttgtgctagattgcagtagtatcaagacgtt 120
           |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 733 taagggcagtttagagaataattgatcagttgtgctagattgcagtaatatcaagacgtt 674

                                                                       
Query: 121 ctattttattgcagtacattaatgtgctacgataacatagatgacaatcaggaattgtgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 ctattttattgcagtacattaatgtgctacgataacatagatgacaatcaggaattgtgt 614

                                                                       
Query: 181 actttaaataatatatagaattaatataatataataaacaatcaatgtttattagcaagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 613 actttaaataatatatagaattaatataatataataaacaatcaatgtttatttgcaagt 554

                                                                       
Query: 241 gttacatactagacctttcttgtatattaaaaaatgtacacatatgtttaaaccttcatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 gttacatactagacctttcttgtatattaaaaaatgtacacatatgtttaaaccttcatg 494

                                                                       
Query: 301 ggacctaattaagagatctgtttttaagtttctatttgtcagttaaaaataaatgtgtta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 493 ggacctaattaagagatctgtttttaagtttctatttgtcagttaaaaagaaatgtgtta 434

                                                                       
Query: 361 ctatcagaaagtacatgtcaagaactatggatgatttgaacttctgccttatttaacaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ctatcagaaagtacatgtcaagaactatggatgatttgaacttctgccttatttaacaag 374

                                                                      
Query: 421 ttaccctgtctcagtttctcgtatgctcctgggagaaaggagacacctaggtctgagat 479
           ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 373 ttaccctgtctcagtttctcgtatgcttctgggagaaaggagacacctaggtctgagat 315


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space:   407561
Effective search space used:   407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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