Query= MSMg01no426_o17.b1 MSMg01no426_o17.b1 CHROMAT_FILE:
MSMg01no426_o17.b1 PHD_FILE: MSMg01no426_o17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:38 2005
(339 letters)
>mm_chr8_104040130_104040868
Length = 739
Score = 582 bits (301), Expect = e-170
Identities = 322/334 (96%), Gaps = 8/334 (2%)
Strand = Plus / Plus
Query: 5 gaattcaatgccatctcctgcctattgtgaacaggcacatacatgttacatatacataca 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 gaattcaatgccatcttctgcctattgtgaacaggcacatacatgttacatatacataca 272
Query: 65 tacatacatacatacatacatacatacatacatacatacactcaaaacactcatagatat 124
|||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 273 tacatacatacatacatacatacatacataca--------ctcaaaacactcatagatat 324
Query: 125 gattttcccatgaagtcaacttaaaaacacagaaagatgcctttctttctatagcatgac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gattttcccatgaagtcaacttaaaaacacagaaagatgcctttctttctatagcatgac 384
Query: 185 tcaaagtcatcactatcaaagacaaaggaacaccggaatctgttcccaaagccatgtgag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcaaagtcatcactatcaaagacaaaggaacaccggaatctgttcccaaagccatgtgag 444
Query: 245 tcctcaggcatggaagcgggagtgggtgggttggtgagcagggcagggggatgatatagg 304
||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 445 tcctcaggcatggaagcaggagtgggtgggttggggagcagggcagggggatgatatagg 504
Query: 305 ggacttttggagagganactaggaaaggggatag 338
|||||||||||||||| |||||||||||||||||
Sbjct: 505 ggacttttggagaggaaactaggaaaggggatag 538
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space: 240900
Effective search space used: 240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no426_o17.g1 MSMg01no426_o17.g1 CHROMAT_FILE:
MSMg01no426_o17.g1 PHD_FILE: MSMg01no426_o17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:38 2005
(494 letters)
>mm_chr8_104166264_104167158
Length = 895
Score = 924 bits (478), Expect = 0.0
Identities = 494/506 (97%), Gaps = 12/506 (2%)
Strand = Plus / Minus
Query: 1 tgagataagacaatgaggacagctgctctggagagtcacctagactaacagttaatgatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tgagataagacaatgaggacagctgctctggagagtcacctagactaacagttaatgatg 450
Query: 61 catgaccatgtcatttattatggtttgatactggtacttagtgtgagcatataaaccaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 catgaccatgtcatttattatggtttgatactggtacttagtgtgagcatataaaccaaa 390
Query: 121 tatggcctagtgtgctttcaccagtgcaaggaacattttatgaacttcttgtagacaggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tatggcctagtgtgctttcaccagtgcaaggaacattttatgaacttcttgtagacaggc 330
Query: 181 ttgctgttttgccaattgtaaaatttaggaagttgagctatagagaaggtttaaggtttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ttgctgttttgccaattgtaaaatttaggaagttgagctatagagaaggtttaaggtttt 270
Query: 241 taaactggttgatgcaggaa-ggggggtacaagtatttaatcttaatattgttttatgac 299
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 269 taaactggttgatgcaggaagggggggtacaagtatttaatcttaatattgttttatgac 210
Query: 300 aagtgt-----------tttgtaggatttgagtactggaccatctgcactgtcatcttat 348
|||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 aagtgttttctttacgatttgtaggatttgagtactggaccatctgcactgtcatcttat 150
Query: 349 acatttatcaatataattacatatcagtatactgaaggctgcccccaataatgccaatga 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 acatttatcaatataattacatatcagtatactgaaggctgcccccaataatgccaatga 90
Query: 409 tattattgtgaagcaatttatatgatatggatcttttgtaacagtgcacatggttgatga 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89 tattattgtgaagcaatttatatgatatggatcttttgtaacagtgcacatggttgatga 30
Query: 469 atcacaactctacagattttgatagt 494
||||||||||||||||||||||||||
Sbjct: 29 atcacaactctacagattttgatagt 4
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 895
Length adjustment: 10
Effective length of query: 484
Effective length of database: 885
Effective search space: 428340
Effective search space used: 428340
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
