BAC Information

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BAC

Clone NameMSMg01-428B12
Chromosome8 (Build37)
Map Location 26,054,359 - 26,054,928
singlet/doubletsinglet
Overlap geneAdam32
Upstream geneZmat4, 1810011O10Rik, Indol1, Indo, Adam18, Adam3, Adam5
Downstream geneAdam9, Tm2d2, Htra4, Plekha2, LOC100042390, Tacc1, LOC670822, LOC100040998, Fgfr1, D030041N04Rik, LOC100042416, Whsc1l1, Ppapdc1, Bag4, Lsm1, Star, Ash2l, Kcnu1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-428B12.T7 (MSMg01no428_b12.b1)MSMg01-428B12.TJ (MSMg01no428_b12.g1)
ACCAG521139AG521140
length777745
length of high quality
(start - end)
96 (80 - 175)570 (78 - 647)
definitionCHROMAT_FILE: MSMg01no428_b12.b1 PHD_FILE: MSMg01no428_b12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:10 2005CHROMAT_FILE: MSMg01no428_b12.g1 PHD_FILE: MSMg01no428_b12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCAATACATGCGGCCGGTAATACGATCACTTTTCATAGAGGAGGCGAG
GAATTCCAGATTTACGAGAACTGCCATGNGGGTGTTGGGAATTGCACCTG
GTCATCTGGAAGAGCAGCCAGTGTTCTTAGCTCCTGAGTCACCTCTCCAG
CCCCTTTTGAACAGATAGCTTAGCATAGCTCCACATTTATGGAAGGCTAG
AAGCATTAACCAAACAGGTATTGGATTTGTTCTGTGAATAAATGCCTGTT
TAGGGAAGGTTAGAAGGAGAAGAATCAGGCTACCTCAGGTAGAGAGAAAA
TGTAGACGAGAGATTTTCGTCTTTCGGGAAGTGAGGGCACACTGGGGTCT
CCCGACAGCTTCTTGCTCCTCCAGTCCTAGTCTGCTCAGTACGGATTCAC
CATTTCTCCCTGACAGAGGTAGAGTCAGATCAGCGCATAACCCGATCTGA
TAATACGGAGAAGACCCCATACCCAATTGCACTCGTTCCGTCTTAGATGA
TTTAATACCTCTTGGACCTATAGACCTCACTCTTCTCCGTCTGATCGTCC
CATATACTGTCGGTTGCCTTGCTTTCGACCCGCATGCCCCCTTTATACCC
GCTTATAATGGTTCCCCTTTTCCCTACCCTTTCTGCCCTCCTTTCACCTA
CATTTTTTTTATTTTTCCCTTTACTTTCCCCTCCCTTTTTCTTTTCCCCC
TCCCCTTATTTTACCCTCTTCTTTCGCCCCCCCCCCTTTATCTCTTCTTC
CACTACCCACCCTTTATATACTATGCC
TCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTGGGATAAATTCTTCTTGGCCA
AGCTTTAACATTTTGATATATCGATTAAAGTCAAACTTATTAATATTTTA
CTTAGAATTTTTAAATTAAGATTATAAGTAGGTAAGCACATTCAACTCCC
TCATACAGGCCTTAGCTTTATTGTGAAAATTATATTAGATATGTGAGACA
AATATGACTTACTTTATGTCTTTTTTTCAGAAGATGCTGTATTCTTTAAT
TCAGCTAATATATAAAACTATTTTGGCCTTTGGATCCTCTGCCTTTCTGT
ATCTTCCTTTGGGTCCTTCTTCCTGTTTGTTCTTTTCTTTTCATGTTGAT
TTATCAATTCTTCCTCCTGGGCCATTTTTTATAGTTCCATTGCTTTTTTC
AAATTTTTTAAATTTAAAGTCATCATAGAATTCTCCTACGGTCTTCTGTA
AAAATTCTTGCTAAAGGATTAGGAAAATGGTCAGTACCTAAGCGTGCTTC
CTCTGCAAGCTTGAGGGTCTGGGTCAGCCCCTCAGTACTTATGTTAAGAG
AGATCCAGATGCTGCTACCCGTACCTGTGACGCCCGTGCTGGGGTGTGGT
TTATTGTTGAGAGGTTCTGAGATGGAGGGAATTCTGCGGCTTGTTGGTTA
GTTTCGCCTATTCATACATTGGCAAGTTCCGCTCCCGCCCGAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no428_b12.g1 MSMg01no428_b12.g1 CHROMAT_FILE:
MSMg01no428_b12.g1 PHD_FILE: MSMg01no428_b12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:10 2005
         (570 letters)



>mm_chr8_26054159_26055129
          Length = 971

 Score = 1040 bits (538), Expect = 0.0
 Identities = 562/570 (98%), Gaps = 1/570 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgggataaattcttcttggccaagctttaacattttgatatatcgattaaagtcaaact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 ttgggataaattcttcttggccaagctttaacattttgatatatcgattaaagtcaaact 711

                                                                       
Query: 61  tattaatattttacttagaatttttaaattaagattataagtaggtaagcacattcaact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 tattaatattttacttagaatttttaaattaagattataagtaggtaagcacattcaact 651

                                                                       
Query: 121 ccctcatacaggccttagctttattgtgaaaattatattagatatgtgagacaaatatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 ccctcatacaggccttagctttattgtgaaaattatattagatatgtgagacaaatatga 591

                                                                       
Query: 181 cttactttatgtctttttttcagaagatgctgtattctttaattcagctaatatataaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 cttactttatgtctttttttcagaagatgctgtattctttaattcagctaatatataaaa 531

                                                                       
Query: 241 cta-ttttggcctttggatcctctgcctttctgtatcttcctttgggtccttcttcctgt 299
           ||| |   ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 ctactcaaggcctttggatcctctgcctttctgtatcttcctttgggtccttcttcctgt 471

                                                                       
Query: 300 ttgttcttttcttttcatgttgatttatcaattcttcctcctgggccattttttatagtt 359
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 470 ttgttcttttcttttcatgttgatttatcagttcttcctcctgggccattttttatagtt 411

                                                                       
Query: 360 ccattgcttttttcaaattttttaaatttaaagtcatcatagaattctcctacggtcttc 419
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 410 ccattgcttttttcaaatttttttaatttaaagtcatcatagaattctcctacggtcttc 351

                                                                       
Query: 420 tgtaaaaattcttgctaaaggattaggaaaatggtcagtacctaagcgtgcttcctctgc 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tgtaaaaattcttgctaaaggattaggaaaatggtcagtacctaagcgtgcttcctctgc 291

                                                                       
Query: 480 aagcttgagggtctgggtcagcccctcagtacttatgttaagagagatccagatgctgct 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 aagcttgagggtctgggtcagcccctcagtacttatgttaagagagatccagatgctgct 231

                                         
Query: 540 acccgtacctgtgacgcccgtgctggggtg 569
           ||| | ||||||||||||||||||||||||
Sbjct: 230 accggcacctgtgacgcccgtgctggggtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 971
Length adjustment: 10
Effective length of query: 560
Effective length of database: 961
Effective search space:   538160
Effective search space used:   538160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)